Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3183

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3182 and GFF3183 are separated by 420 nucleotidesGFF3183 and GFF3184 are separated by 810 nucleotides GFF3182 - DNA repair protein RadC, at 62,001 to 62,576 GFF3182 GFF3183 - hypothetical protein, at 62,997 to 63,233 GFF3183 GFF3184 - putative flavocytochrome, at 64,044 to 65,354 GFF3184 Position (kb) 62 63 64Strain fitness (log2 ratio) -1 0 1 2at 62.684 kb on - strandat 62.721 kb on - strandat 62.858 kb on + strandat 62.939 kb on - strandat 62.942 kb on + strandat 63.013 kb on + strandat 63.348 kb on + strandat 63.349 kb on - strandat 63.638 kb on + strandat 63.639 kb on - strandat 63.649 kb on - strandat 63.649 kb on - strandat 63.675 kb on + strandat 63.988 kb on - strandat 63.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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62,684 - +0.4
62,721 - +0.4
62,858 + -0.0
62,939 - -1.3
62,942 + +0.2
63,013 + -1.5
63,348 + -1.4
63,349 - -0.1
63,638 + +0.3
63,639 - +0.0
63,649 - +1.2
63,649 - +2.0
63,675 + +0.6
63,988 - -1.0
63,988 - -0.6

Or see this region's nucleotide sequence