Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3061

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3060 and GFF3061 are separated by 17 nucleotidesGFF3061 and GFF3062 are separated by 112 nucleotides GFF3060 - Lysine 2-monooxygenase (EC 1.13.12.2), at 139,378 to 141,066 GFF3060 GFF3061 - FIG00931323: hypothetical protein, at 141,084 to 141,713 GFF3061 GFF3062 - Chromosome initiation inhibitor, at 141,826 to 142,743 GFF3062 Position (kb) 141 142Strain fitness (log2 ratio) -1 0 1at 140.100 kb on - strand, within GFF3060at 140.855 kb on + strand, within GFF3060at 140.855 kb on + strand, within GFF3060at 140.891 kb on + strand, within GFF3060at 140.891 kb on + strand, within GFF3060at 140.892 kb on - strand, within GFF3060at 141.274 kb on + strand, within GFF3061at 141.274 kb on + strand, within GFF3061at 141.457 kb on + strand, within GFF3061at 141.680 kb on + strandat 141.681 kb on - strandat 141.776 kb on - strandat 142.327 kb on + strand, within GFF3062at 142.637 kb on - strand, within GFF3062

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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140,100 - GFF3060 0.43 +0.6
140,855 + GFF3060 0.87 +0.4
140,855 + GFF3060 0.87 -0.4
140,891 + GFF3060 0.90 +0.0
140,891 + GFF3060 0.90 +0.3
140,892 - GFF3060 0.90 -0.2
141,274 + GFF3061 0.30 -0.1
141,274 + GFF3061 0.30 -0.3
141,457 + GFF3061 0.59 -0.3
141,680 + -0.1
141,681 - -0.0
141,776 - -1.1
142,327 + GFF3062 0.55 +0.1
142,637 - GFF3062 0.88 -0.7

Or see this region's nucleotide sequence