Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF303 and GFF304 are separated by 11 nucleotides
GFF303 - hypothetical protein, at 319,442 to 321,337
GFF303
GFF304 - ATP-dependent protease domain protein (EC 3.4.21.-), at 321,349 to 322,773
GFF304
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 320.450 kb on + strand, within GFF303 at 320.450 kb on + strand, within GFF303 at 320.451 kb on - strand, within GFF303 at 320.451 kb on - strand, within GFF303 at 320.451 kb on - strand, within GFF303 at 320.451 kb on - strand, within GFF303 at 320.451 kb on - strand, within GFF303 at 320.451 kb on - strand, within GFF303 at 320.451 kb on - strand, within GFF303 at 320.458 kb on + strand, within GFF303 at 320.683 kb on - strand, within GFF303 at 320.775 kb on + strand, within GFF303 at 320.775 kb on + strand, within GFF303 at 320.775 kb on + strand, within GFF303 at 320.775 kb on + strand, within GFF303 at 320.775 kb on + strand, within GFF303 at 320.775 kb on + strand, within GFF303 at 320.775 kb on + strand, within GFF303 at 320.776 kb on - strand, within GFF303 at 320.776 kb on - strand, within GFF303 at 320.776 kb on - strand, within GFF303 at 320.776 kb on - strand, within GFF303 at 320.776 kb on - strand, within GFF303 at 320.776 kb on - strand, within GFF303 at 320.776 kb on - strand, within GFF303 at 321.051 kb on + strand, within GFF303 at 321.051 kb on + strand, within GFF303 at 321.051 kb on + strand, within GFF303 at 321.052 kb on - strand, within GFF303 at 321.052 kb on - strand, within GFF303 at 321.092 kb on + strand, within GFF303 at 321.092 kb on + strand, within GFF303 at 321.092 kb on + strand, within GFF303 at 321.093 kb on - strand, within GFF303 at 321.093 kb on - strand, within GFF303 at 321.093 kb on - strand, within GFF303 at 321.160 kb on + strand at 321.160 kb on + strand at 321.160 kb on + strand at 321.160 kb on + strand at 321.188 kb on + strand at 321.188 kb on + strand at 321.189 kb on - strand at 321.189 kb on - strand at 321.286 kb on + strand at 321.286 kb on + strand at 321.286 kb on + strand at 321.287 kb on - strand at 321.311 kb on + strand at 321.311 kb on + strand at 321.311 kb on + strand at 321.312 kb on - strand at 321.385 kb on - strand at 321.385 kb on - strand at 321.544 kb on + strand, within GFF304 at 321.544 kb on + strand, within GFF304 at 321.735 kb on + strand, within GFF304 at 321.735 kb on + strand, within GFF304 at 321.735 kb on + strand, within GFF304 at 321.736 kb on - strand, within GFF304 at 321.736 kb on - strand, within GFF304 at 321.736 kb on - strand, within GFF304 at 321.822 kb on - strand, within GFF304 at 321.829 kb on + strand, within GFF304 at 321.829 kb on + strand, within GFF304 at 321.829 kb on + strand, within GFF304 at 321.829 kb on + strand, within GFF304 at 321.830 kb on - strand, within GFF304 at 321.830 kb on - strand, within GFF304 at 321.830 kb on - strand, within GFF304 at 321.830 kb on - strand, within GFF304 at 322.151 kb on + strand, within GFF304 at 322.151 kb on + strand, within GFF304 at 322.152 kb on - strand, within GFF304 at 322.227 kb on + strand, within GFF304 at 322.227 kb on + strand, within GFF304 at 322.227 kb on + strand, within GFF304 at 322.228 kb on - strand, within GFF304 at 322.270 kb on + strand, within GFF304 at 322.271 kb on - strand, within GFF304 at 322.271 kb on - strand, within GFF304 at 322.320 kb on + strand, within GFF304 at 322.320 kb on + strand, within GFF304 at 322.320 kb on + strand, within GFF304 at 322.320 kb on + strand, within GFF304 at 322.406 kb on + strand, within GFF304 at 322.406 kb on + strand, within GFF304 at 322.406 kb on + strand, within GFF304 at 322.406 kb on + strand, within GFF304 at 322.406 kb on + strand, within GFF304 at 322.406 kb on + strand, within GFF304 at 322.407 kb on - strand, within GFF304 at 322.407 kb on - strand, within GFF304 at 322.407 kb on - strand, within GFF304 at 322.407 kb on - strand, within GFF304 at 322.407 kb on - strand, within GFF304 at 322.407 kb on - strand, within GFF304 at 322.450 kb on + strand, within GFF304 at 322.450 kb on + strand, within GFF304 at 322.450 kb on + strand, within GFF304 at 322.450 kb on + strand, within GFF304 at 322.451 kb on - strand, within GFF304 at 322.451 kb on - strand, within GFF304 at 322.451 kb on - strand, within GFF304 at 322.486 kb on - strand, within GFF304 at 322.486 kb on - strand, within GFF304 at 322.581 kb on + strand, within GFF304 at 322.582 kb on - strand, within GFF304 at 322.582 kb on - strand, within GFF304 at 322.645 kb on + strand at 322.646 kb on - strand at 322.697 kb on + strand at 322.814 kb on + strand at 322.814 kb on + strand at 322.814 kb on + strand at 322.814 kb on + strand at 322.814 kb on + strand at 322.814 kb on + strand at 322.815 kb on - strand at 322.815 kb on - strand at 322.815 kb on - strand at 322.815 kb on - strand at 322.815 kb on - strand at 322.945 kb on + strand at 322.945 kb on + strand at 322.945 kb on + strand at 322.945 kb on + strand at 322.946 kb on - strand at 322.989 kb on + strand at 323.169 kb on - strand at 323.288 kb on + strand at 323.289 kb on - strand at 323.289 kb on - strand at 323.289 kb on - strand at 323.289 kb on - strand at 323.309 kb on + strand at 323.309 kb on + strand at 323.309 kb on + strand at 323.310 kb on - strand at 323.310 kb on - strand at 323.310 kb on - strand at 323.310 kb on - strand at 323.310 kb on - strand at 323.481 kb on + strand at 323.482 kb on - strand at 323.511 kb on - strand at 323.563 kb on + strand at 323.563 kb on + strand at 323.563 kb on + strand at 323.564 kb on - strand at 323.564 kb on - strand at 323.564 kb on - strand at 323.564 kb on - strand at 323.564 kb on - strand at 323.571 kb on - strand at 323.604 kb on - strand at 323.604 kb on - strand at 323.618 kb on + strand at 323.619 kb on - strand at 323.619 kb on - strand at 323.619 kb on - strand at 323.619 kb on - strand at 323.629 kb on + strand at 323.629 kb on + strand at 323.629 kb on + strand at 323.629 kb on + strand at 323.630 kb on - strand at 323.630 kb on - strand at 323.630 kb on - strand at 323.657 kb on + strand at 323.657 kb on + strand at 323.657 kb on + strand at 323.708 kb on - strand at 323.709 kb on - strand at 323.721 kb on + strand at 323.721 kb on + strand at 323.721 kb on + strand at 323.721 kb on + strand at 323.722 kb on - strand at 323.722 kb on - strand at 323.722 kb on - strand at 323.754 kb on + strand at 323.754 kb on + strand at 323.755 kb on - strand at 323.755 kb on - strand at 323.772 kb on + strand at 323.772 kb on + strand at 323.772 kb on + strand at 323.772 kb on + strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 320,450 + GFF303 0.53 +0.4 320,450 + GFF303 0.53 +0.8 320,451 - GFF303 0.53 +0.2 320,451 - GFF303 0.53 +0.6 320,451 - GFF303 0.53 +0.3 320,451 - GFF303 0.53 -0.3 320,451 - GFF303 0.53 +0.2 320,451 - GFF303 0.53 -1.7 320,451 - GFF303 0.53 -1.5 320,458 + GFF303 0.54 +0.0 320,683 - GFF303 0.65 -0.1 320,775 + GFF303 0.70 +0.5 320,775 + GFF303 0.70 +0.5 320,775 + GFF303 0.70 +0.0 320,775 + GFF303 0.70 -0.4 320,775 + GFF303 0.70 +0.7 320,775 + GFF303 0.70 +0.2 320,775 + GFF303 0.70 -0.2 320,776 - GFF303 0.70 -2.2 320,776 - GFF303 0.70 +0.4 320,776 - GFF303 0.70 +0.3 320,776 - GFF303 0.70 +1.1 320,776 - GFF303 0.70 -0.9 320,776 - GFF303 0.70 -0.3 320,776 - GFF303 0.70 +0.0 321,051 + GFF303 0.85 +0.9 321,051 + GFF303 0.85 +0.0 321,051 + GFF303 0.85 -2.6 321,052 - GFF303 0.85 +0.1 321,052 - GFF303 0.85 +0.3 321,092 + GFF303 0.87 +0.7 321,092 + GFF303 0.87 -0.0 321,092 + GFF303 0.87 -0.2 321,093 - GFF303 0.87 -0.6 321,093 - GFF303 0.87 +0.2 321,093 - GFF303 0.87 -0.4 321,160 + -0.6 321,160 + -1.1 321,160 + +1.1 321,160 + +0.6 321,188 + -0.2 321,188 + +0.8 321,189 - +0.5 321,189 - -0.8 321,286 + -0.1 321,286 + -0.0 321,286 + +0.5 321,287 - +0.7 321,311 + +0.2 321,311 + +0.3 321,311 + +0.1 321,312 - -0.0 321,385 - -0.2 321,385 - +0.2 321,544 + GFF304 0.14 +0.0 321,544 + GFF304 0.14 +0.2 321,735 + GFF304 0.27 +0.1 321,735 + GFF304 0.27 -1.1 321,735 + GFF304 0.27 +0.8 321,736 - GFF304 0.27 +0.8 321,736 - GFF304 0.27 +0.6 321,736 - GFF304 0.27 +0.6 321,822 - GFF304 0.33 -1.2 321,829 + GFF304 0.34 -0.3 321,829 + GFF304 0.34 +0.8 321,829 + GFF304 0.34 -0.2 321,829 + GFF304 0.34 -0.6 321,830 - GFF304 0.34 +0.3 321,830 - GFF304 0.34 +0.9 321,830 - GFF304 0.34 -1.2 321,830 - GFF304 0.34 +0.6 322,151 + GFF304 0.56 +0.2 322,151 + GFF304 0.56 +0.0 322,152 - GFF304 0.56 +0.5 322,227 + GFF304 0.62 -0.4 322,227 + GFF304 0.62 -0.4 322,227 + GFF304 0.62 -0.6 322,228 - GFF304 0.62 -0.1 322,270 + GFF304 0.65 +0.4 322,271 - GFF304 0.65 -0.4 322,271 - GFF304 0.65 -0.1 322,320 + GFF304 0.68 +1.7 322,320 + GFF304 0.68 -0.5 322,320 + GFF304 0.68 +0.1 322,320 + GFF304 0.68 +1.9 322,406 + GFF304 0.74 -1.4 322,406 + GFF304 0.74 -0.0 322,406 + GFF304 0.74 -0.4 322,406 + GFF304 0.74 +2.2 322,406 + GFF304 0.74 +0.5 322,406 + GFF304 0.74 +0.6 322,407 - GFF304 0.74 +0.6 322,407 - GFF304 0.74 +0.0 322,407 - GFF304 0.74 -0.7 322,407 - GFF304 0.74 -0.0 322,407 - GFF304 0.74 +0.2 322,407 - GFF304 0.74 -0.3 322,450 + GFF304 0.77 +1.4 322,450 + GFF304 0.77 -0.3 322,450 + GFF304 0.77 +0.2 322,450 + GFF304 0.77 +0.8 322,451 - GFF304 0.77 -0.9 322,451 - GFF304 0.77 +0.8 322,451 - GFF304 0.77 +0.1 322,486 - GFF304 0.80 +0.8 322,486 - GFF304 0.80 -0.1 322,581 + GFF304 0.86 -0.9 322,582 - GFF304 0.87 -0.1 322,582 - GFF304 0.87 -0.8 322,645 + +1.1 322,646 - +0.4 322,697 + +0.8 322,814 + -0.3 322,814 + -1.9 322,814 + +1.1 322,814 + +1.1 322,814 + +0.3 322,814 + -0.9 322,815 - +0.9 322,815 - -0.3 322,815 - +0.4 322,815 - +0.3 322,815 - +0.1 322,945 + +0.3 322,945 + +0.0 322,945 + -3.5 322,945 + +0.3 322,946 - +0.2 322,989 + +0.4 323,169 - +0.0 323,288 + -0.3 323,289 - +0.5 323,289 - +0.0 323,289 - -0.2 323,289 - +0.3 323,309 + -1.2 323,309 + -0.6 323,309 + -1.6 323,310 - +0.1 323,310 - +0.2 323,310 - -0.6 323,310 - +0.2 323,310 - -1.6 323,481 + +0.0 323,482 - -1.2 323,511 - +0.2 323,563 + -0.4 323,563 + +0.0 323,563 + +0.8 323,564 - -0.5 323,564 - -0.3 323,564 - +0.5 323,564 - -0.0 323,564 - -1.2 323,571 - +0.4 323,604 - +0.1 323,604 - -0.1 323,618 + -1.2 323,619 - +0.0 323,619 - -0.6 323,619 - -0.4 323,619 - -0.3 323,629 + +0.3 323,629 + -0.9 323,629 + -0.5 323,629 + -0.5 323,630 - -0.1 323,630 - -0.1 323,630 - +0.2 323,657 + -0.0 323,657 + +0.0 323,657 + -0.2 323,708 - -0.6 323,709 - +1.4 323,721 + -0.8 323,721 + -0.7 323,721 + +1.2 323,721 + -0.3 323,722 - +0.0 323,722 - -0.8 323,722 - -0.2 323,754 + +0.2 323,754 + -0.3 323,755 - -0.4 323,755 - +0.6 323,772 + +0.6 323,772 + -1.5 323,772 + -0.0 323,772 + +0.8 323,773 - -0.2 323,773 - +1.1 323,773 - -0.7 323,773 - -0.1 323,773 - +0.1 323,773 - -0.8 323,773 - -0.4 323,773 - +1.0 323,773 - +0.7 323,773 - -0.4 323,773 - +0.1
Or see this region's nucleotide sequence