Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2959

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2957 and GFF2958 are separated by 28 nucleotidesGFF2958 and GFF2959 overlap by 8 nucleotidesGFF2959 and GFF2960 are separated by 3 nucleotides GFF2957 - TRAP transporter solute receptor, unknown substrate 5, at 36,118 to 37,131 GFF2957 GFF2958 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 5, at 37,160 to 37,699 GFF2958 GFF2959 - TRAP-type C4-dicarboxylate transport system, large permease component, at 37,692 to 38,993 GFF2959 GFF2960 - Gluconolactonase, at 38,997 to 39,923 GFF2960 Position (kb) 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2at 36.808 kb on + strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.814 kb on + strand, within GFF2957at 37.055 kb on - strandat 37.401 kb on - strand, within GFF2958at 37.401 kb on - strand, within GFF2958at 37.701 kb on + strandat 37.702 kb on - strandat 37.791 kb on + strandat 37.792 kb on - strandat 37.863 kb on + strand, within GFF2959at 37.864 kb on - strand, within GFF2959at 37.864 kb on - strand, within GFF2959at 37.864 kb on - strand, within GFF2959at 37.864 kb on - strand, within GFF2959at 37.939 kb on - strand, within GFF2959at 38.179 kb on - strand, within GFF2959at 38.265 kb on + strand, within GFF2959at 38.265 kb on + strand, within GFF2959at 38.265 kb on + strand, within GFF2959at 38.265 kb on + strand, within GFF2959at 38.265 kb on + strand, within GFF2959at 38.266 kb on - strand, within GFF2959at 38.266 kb on - strand, within GFF2959at 38.403 kb on + strand, within GFF2959at 38.404 kb on - strand, within GFF2959at 38.556 kb on + strand, within GFF2959at 38.556 kb on + strand, within GFF2959at 38.556 kb on + strand, within GFF2959at 38.557 kb on - strand, within GFF2959at 38.557 kb on - strand, within GFF2959at 39.232 kb on - strand, within GFF2960at 39.414 kb on + strand, within GFF2960at 39.415 kb on - strand, within GFF2960at 39.559 kb on - strand, within GFF2960at 39.636 kb on + strand, within GFF2960at 39.636 kb on + strand, within GFF2960at 39.636 kb on + strand, within GFF2960at 39.636 kb on + strand, within GFF2960at 39.636 kb on + strand, within GFF2960at 39.636 kb on + strand, within GFF2960at 39.636 kb on + strand, within GFF2960at 39.637 kb on - strand, within GFF2960at 39.760 kb on - strand, within GFF2960at 39.807 kb on + strand, within GFF2960at 39.808 kb on - strand, within GFF2960at 39.834 kb on + strandat 39.834 kb on + strandat 39.834 kb on + strandat 39.834 kb on + strandat 39.900 kb on + strandat 39.900 kb on + strandat 39.901 kb on - strandat 39.901 kb on - strandat 39.901 kb on - strandat 39.901 kb on - strandat 39.917 kb on + strandat 39.917 kb on + strandat 39.917 kb on + strandat 39.917 kb on + strandat 39.918 kb on - strandat 39.918 kb on - strandat 39.918 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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36,808 + GFF2957 0.68 -0.4
36,809 - GFF2957 0.68 +0.7
36,809 - GFF2957 0.68 +0.1
36,809 - GFF2957 0.68 +0.2
36,809 - GFF2957 0.68 -1.7
36,814 + GFF2957 0.69 +0.3
37,055 - +1.1
37,401 - GFF2958 0.45 -0.0
37,401 - GFF2958 0.45 -1.2
37,701 + -0.0
37,702 - -0.8
37,791 + -0.4
37,792 - +0.8
37,863 + GFF2959 0.13 -0.8
37,864 - GFF2959 0.13 -0.1
37,864 - GFF2959 0.13 -1.7
37,864 - GFF2959 0.13 +1.9
37,864 - GFF2959 0.13 -0.1
37,939 - GFF2959 0.19 -0.0
38,179 - GFF2959 0.37 -1.5
38,265 + GFF2959 0.44 +0.0
38,265 + GFF2959 0.44 +1.2
38,265 + GFF2959 0.44 +0.0
38,265 + GFF2959 0.44 -1.1
38,265 + GFF2959 0.44 -0.3
38,266 - GFF2959 0.44 -0.3
38,266 - GFF2959 0.44 -0.5
38,403 + GFF2959 0.55 +0.6
38,404 - GFF2959 0.55 +0.1
38,556 + GFF2959 0.66 -0.3
38,556 + GFF2959 0.66 -0.1
38,556 + GFF2959 0.66 -1.1
38,557 - GFF2959 0.66 +0.2
38,557 - GFF2959 0.66 +0.3
39,232 - GFF2960 0.25 +0.9
39,414 + GFF2960 0.45 -0.1
39,415 - GFF2960 0.45 -0.4
39,559 - GFF2960 0.61 -0.3
39,636 + GFF2960 0.69 +0.3
39,636 + GFF2960 0.69 +0.4
39,636 + GFF2960 0.69 -1.0
39,636 + GFF2960 0.69 -0.3
39,636 + GFF2960 0.69 +1.0
39,636 + GFF2960 0.69 -0.2
39,636 + GFF2960 0.69 +0.7
39,637 - GFF2960 0.69 -0.1
39,760 - GFF2960 0.82 -0.3
39,807 + GFF2960 0.87 -0.2
39,808 - GFF2960 0.87 +0.4
39,834 + -0.1
39,834 + -0.8
39,834 + +0.9
39,834 + -0.4
39,900 + -0.1
39,900 + +0.8
39,901 - +1.0
39,901 - -1.8
39,901 - -0.3
39,901 - +1.0
39,917 + -2.2
39,917 + -0.5
39,917 + -0.2
39,917 + +0.1
39,918 - +0.7
39,918 - -1.0
39,918 - -0.1

Or see this region's nucleotide sequence