Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2955

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2954 and GFF3113 are separated by 139 nucleotidesGFF3113 and GFF2955 are separated by 155 nucleotidesGFF2955 and GFF2956 are separated by 78 nucleotides GFF2954 - Cytochrome c5, at 32,758 to 33,621 GFF2954 GFF3113 - tRNA-Arg-CCG, at 33,761 to 33,833 GFF3113 GFF2955 - Transcriptional regulator, IclR family, at 33,989 to 34,807 GFF2955 GFF2956 - L-lactate dehydrogenase (EC 1.1.2.3), at 34,886 to 36,121 GFF2956 Position (kb) 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 33.273 kb on - strand, within GFF2954at 33.273 kb on - strand, within GFF2954at 33.368 kb on + strand, within GFF2954at 33.368 kb on + strand, within GFF2954at 33.368 kb on + strand, within GFF2954at 33.368 kb on + strand, within GFF2954at 33.368 kb on + strand, within GFF2954at 33.369 kb on - strand, within GFF2954at 33.369 kb on - strand, within GFF2954at 33.369 kb on - strand, within GFF2954at 33.369 kb on - strand, within GFF2954at 33.369 kb on - strand, within GFF2954at 33.369 kb on - strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.500 kb on + strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.501 kb on - strand, within GFF2954at 33.503 kb on + strand, within GFF2954at 33.503 kb on + strand, within GFF2954at 33.503 kb on + strand, within GFF2954at 33.503 kb on + strand, within GFF2954at 33.503 kb on + strand, within GFF2954at 33.503 kb on + strand, within GFF2954at 33.503 kb on + strand, within GFF2954at 33.504 kb on - strand, within GFF2954at 33.504 kb on - strand, within GFF2954at 33.504 kb on - strand, within GFF2954at 33.504 kb on - strand, within GFF2954at 33.504 kb on - strand, within GFF2954at 33.504 kb on - strand, within GFF2954at 33.504 kb on - strand, within GFF2954at 33.504 kb on - strand, within GFF2954at 33.504 kb on - strand, within GFF2954at 33.591 kb on + strandat 33.592 kb on - strandat 33.592 kb on - strandat 33.701 kb on - strandat 33.701 kb on - strandat 33.702 kb on + strandat 33.703 kb on - strandat 33.703 kb on - strandat 33.703 kb on - strandat 33.703 kb on - strandat 33.746 kb on + strandat 33.746 kb on + strandat 33.747 kb on - strandat 33.872 kb on + strandat 33.872 kb on + strandat 33.873 kb on - strandat 33.873 kb on - strandat 33.873 kb on - strandat 33.873 kb on - strandat 33.893 kb on + strandat 33.893 kb on + strandat 33.893 kb on + strandat 33.894 kb on - strandat 34.229 kb on + strand, within GFF2955at 34.229 kb on + strand, within GFF2955at 34.229 kb on + strand, within GFF2955at 34.229 kb on + strand, within GFF2955at 34.229 kb on + strand, within GFF2955at 34.229 kb on - strand, within GFF2955at 34.230 kb on - strand, within GFF2955at 34.230 kb on - strand, within GFF2955at 34.356 kb on - strand, within GFF2955at 34.356 kb on - strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.373 kb on + strand, within GFF2955at 34.374 kb on - strand, within GFF2955at 34.374 kb on - strand, within GFF2955at 34.374 kb on - strand, within GFF2955at 34.374 kb on - strand, within GFF2955at 34.374 kb on - strand, within GFF2955at 34.374 kb on - strand, within GFF2955at 34.425 kb on - strand, within GFF2955at 34.425 kb on - strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.580 kb on + strand, within GFF2955at 34.581 kb on - strand, within GFF2955at 34.581 kb on - strand, within GFF2955at 34.581 kb on - strand, within GFF2955at 34.581 kb on - strand, within GFF2955at 34.705 kb on + strand, within GFF2955at 34.719 kb on - strand, within GFF2955at 34.719 kb on - strand, within GFF2955at 34.719 kb on - strand, within GFF2955at 34.792 kb on + strandat 34.793 kb on - strandat 34.793 kb on - strandat 35.100 kb on - strand, within GFF2956at 35.279 kb on + strand, within GFF2956at 35.279 kb on + strand, within GFF2956at 35.279 kb on + strand, within GFF2956at 35.280 kb on - strand, within GFF2956at 35.280 kb on - strand, within GFF2956at 35.280 kb on - strand, within GFF2956at 35.280 kb on - strand, within GFF2956at 35.481 kb on - strand, within GFF2956at 35.525 kb on + strand, within GFF2956at 35.525 kb on + strand, within GFF2956at 35.525 kb on + strand, within GFF2956at 35.526 kb on - strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.567 kb on + strand, within GFF2956at 35.568 kb on - strand, within GFF2956at 35.568 kb on - strand, within GFF2956

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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33,273 - GFF2954 0.60 -0.8
33,273 - GFF2954 0.60 -0.1
33,368 + GFF2954 0.71 +1.5
33,368 + GFF2954 0.71 +0.6
33,368 + GFF2954 0.71 -2.0
33,368 + GFF2954 0.71 -0.8
33,368 + GFF2954 0.71 +0.4
33,369 - GFF2954 0.71 -1.4
33,369 - GFF2954 0.71 -0.6
33,369 - GFF2954 0.71 -1.2
33,369 - GFF2954 0.71 -0.8
33,369 - GFF2954 0.71 -1.2
33,369 - GFF2954 0.71 +0.3
33,500 + GFF2954 0.86 -0.5
33,500 + GFF2954 0.86 -1.7
33,500 + GFF2954 0.86 -0.7
33,500 + GFF2954 0.86 +1.7
33,500 + GFF2954 0.86 -2.4
33,500 + GFF2954 0.86 +0.3
33,500 + GFF2954 0.86 -0.0
33,500 + GFF2954 0.86 +0.3
33,500 + GFF2954 0.86 -1.1
33,500 + GFF2954 0.86 -0.1
33,500 + GFF2954 0.86 -1.3
33,501 - GFF2954 0.86 -1.7
33,501 - GFF2954 0.86 -1.2
33,501 - GFF2954 0.86 -2.4
33,501 - GFF2954 0.86 -1.7
33,501 - GFF2954 0.86 -2.6
33,501 - GFF2954 0.86 -0.9
33,501 - GFF2954 0.86 -0.4
33,501 - GFF2954 0.86 +0.0
33,501 - GFF2954 0.86 -2.2
33,501 - GFF2954 0.86 -0.5
33,501 - GFF2954 0.86 -1.3
33,501 - GFF2954 0.86 +0.6
33,501 - GFF2954 0.86 +0.1
33,501 - GFF2954 0.86 -1.7
33,501 - GFF2954 0.86 -0.1
33,501 - GFF2954 0.86 -0.6
33,501 - GFF2954 0.86 -0.4
33,503 + GFF2954 0.86 +0.5
33,503 + GFF2954 0.86 -0.1
33,503 + GFF2954 0.86 -0.4
33,503 + GFF2954 0.86 -0.2
33,503 + GFF2954 0.86 +0.0
33,503 + GFF2954 0.86 -1.3
33,503 + GFF2954 0.86 -0.8
33,504 - GFF2954 0.86 -0.9
33,504 - GFF2954 0.86 -1.0
33,504 - GFF2954 0.86 -0.1
33,504 - GFF2954 0.86 -0.9
33,504 - GFF2954 0.86 -0.5
33,504 - GFF2954 0.86 -1.2
33,504 - GFF2954 0.86 -0.5
33,504 - GFF2954 0.86 -1.1
33,504 - GFF2954 0.86 -0.7
33,591 + -0.2
33,592 - -0.7
33,592 - -0.2
33,701 - -2.7
33,701 - -3.3
33,702 + -0.7
33,703 - -0.8
33,703 - +0.1
33,703 - +0.0
33,703 - +0.0
33,746 + -0.0
33,746 + -0.2
33,747 - +0.8
33,872 + -0.5
33,872 + +0.5
33,873 - -2.3
33,873 - +0.1
33,873 - +1.5
33,873 - +0.1
33,893 + +0.1
33,893 + -0.4
33,893 + -1.1
33,894 - +0.7
34,229 + GFF2955 0.29 -0.4
34,229 + GFF2955 0.29 +0.3
34,229 + GFF2955 0.29 +0.5
34,229 + GFF2955 0.29 +0.5
34,229 + GFF2955 0.29 +0.4
34,229 - GFF2955 0.29 +0.6
34,230 - GFF2955 0.29 +0.4
34,230 - GFF2955 0.29 -0.1
34,356 - GFF2955 0.45 +0.1
34,356 - GFF2955 0.45 +0.8
34,373 + GFF2955 0.47 -0.1
34,373 + GFF2955 0.47 +0.1
34,373 + GFF2955 0.47 +0.0
34,373 + GFF2955 0.47 -0.0
34,373 + GFF2955 0.47 +0.5
34,373 + GFF2955 0.47 +0.4
34,374 - GFF2955 0.47 -0.1
34,374 - GFF2955 0.47 -1.3
34,374 - GFF2955 0.47 +0.0
34,374 - GFF2955 0.47 -0.5
34,374 - GFF2955 0.47 +1.8
34,374 - GFF2955 0.47 -0.1
34,425 - GFF2955 0.53 +0.3
34,425 - GFF2955 0.53 -0.2
34,580 + GFF2955 0.72 -0.4
34,580 + GFF2955 0.72 +1.5
34,580 + GFF2955 0.72 +0.4
34,580 + GFF2955 0.72 -0.2
34,580 + GFF2955 0.72 -0.1
34,580 + GFF2955 0.72 -0.8
34,580 + GFF2955 0.72 +0.9
34,580 + GFF2955 0.72 +0.1
34,580 + GFF2955 0.72 +0.1
34,580 + GFF2955 0.72 -0.3
34,581 - GFF2955 0.72 -0.0
34,581 - GFF2955 0.72 -0.4
34,581 - GFF2955 0.72 -0.5
34,581 - GFF2955 0.72 +0.6
34,705 + GFF2955 0.87 +0.4
34,719 - GFF2955 0.89 +0.1
34,719 - GFF2955 0.89 -0.3
34,719 - GFF2955 0.89 -0.8
34,792 + +0.6
34,793 - +0.9
34,793 - -0.3
35,100 - GFF2956 0.17 -1.0
35,279 + GFF2956 0.32 +1.1
35,279 + GFF2956 0.32 +0.8
35,279 + GFF2956 0.32 -0.8
35,280 - GFF2956 0.32 +0.0
35,280 - GFF2956 0.32 +0.1
35,280 - GFF2956 0.32 -0.0
35,280 - GFF2956 0.32 +0.3
35,481 - GFF2956 0.48 -0.2
35,525 + GFF2956 0.52 -1.1
35,525 + GFF2956 0.52 -1.3
35,525 + GFF2956 0.52 +2.1
35,526 - GFF2956 0.52 +1.0
35,567 + GFF2956 0.55 -0.4
35,567 + GFF2956 0.55 +0.1
35,567 + GFF2956 0.55 -0.1
35,567 + GFF2956 0.55 -0.2
35,567 + GFF2956 0.55 -0.5
35,567 + GFF2956 0.55 -0.1
35,568 - GFF2956 0.55 +0.2
35,568 - GFF2956 0.55 -0.0

Or see this region's nucleotide sequence