Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF293

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF291 and GFF292 are separated by 34 nucleotidesGFF292 and GFF293 are separated by 38 nucleotidesGFF293 and GFF294 are separated by 170 nucleotides GFF291 - Transporter, at 305,673 to 306,284 GFF291 GFF292 - FIG001943: hypothetical protein YajQ, at 306,319 to 306,810 GFF292 GFF293 - UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158), at 306,849 to 307,901 GFF293 GFF294 - Argininosuccinate synthase (EC 6.3.4.5), at 308,072 to 309,403 GFF294 Position (kb) 306 307 308Strain fitness (log2 ratio) -3 -2 -1 0 1at 305.893 kb on + strand, within GFF291at 305.893 kb on + strand, within GFF291at 305.893 kb on + strand, within GFF291at 305.893 kb on + strand, within GFF291at 306.720 kb on - strand, within GFF292at 308.073 kb on + strandat 308.073 kb on + strandat 308.073 kb on + strandat 308.074 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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305,893 + GFF291 0.36 -1.3
305,893 + GFF291 0.36 -0.2
305,893 + GFF291 0.36 -3.0
305,893 + GFF291 0.36 +1.2
306,720 - GFF292 0.82 +1.0
308,073 + -0.2
308,073 + -1.4
308,073 + -0.6
308,074 - +0.6

Or see this region's nucleotide sequence