Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF287 and GFF288 are separated by 8 nucleotides GFF288 and GFF289 are separated by 52 nucleotides GFF289 and GFF290 overlap by 4 nucleotides
GFF287 - Oxidoreductase, at 303,091 to 304,134
GFF287
GFF288 - Transcriptional regulator, at 304,143 to 304,634
GFF288
GFF289 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY, at 304,687 to 305,310
GFF289
GFF290 - RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein, at 305,307 to 305,672
GFF290
Position (kb) 304
305 Strain fitness (log2 ratio) -1
0
1 at 303.247 kb on + strand, within GFF287 at 303.247 kb on + strand, within GFF287 at 303.248 kb on - strand, within GFF287 at 303.248 kb on - strand, within GFF287 at 303.248 kb on - strand, within GFF287 at 303.517 kb on + strand, within GFF287 at 303.517 kb on + strand, within GFF287 at 303.518 kb on - strand, within GFF287 at 303.518 kb on - strand, within GFF287 at 303.518 kb on - strand, within GFF287 at 303.518 kb on - strand, within GFF287 at 303.707 kb on - strand, within GFF287 at 303.728 kb on - strand, within GFF287 at 303.728 kb on - strand, within GFF287 at 303.817 kb on + strand, within GFF287 at 303.817 kb on + strand, within GFF287 at 303.817 kb on + strand, within GFF287 at 303.818 kb on - strand, within GFF287 at 303.863 kb on - strand, within GFF287 at 303.863 kb on - strand, within GFF287 at 303.863 kb on - strand, within GFF287 at 303.923 kb on - strand, within GFF287 at 303.923 kb on - strand, within GFF287 at 303.923 kb on - strand, within GFF287 at 303.923 kb on - strand, within GFF287 at 303.982 kb on + strand, within GFF287 at 304.224 kb on + strand, within GFF288 at 304.225 kb on - strand, within GFF288 at 304.225 kb on - strand, within GFF288 at 304.446 kb on + strand, within GFF288 at 304.447 kb on - strand, within GFF288 at 304.632 kb on + strand at 304.633 kb on - strand at 304.633 kb on - strand at 305.350 kb on - strand, within GFF290 at 305.382 kb on + strand, within GFF290 at 305.382 kb on + strand, within GFF290 at 305.383 kb on - strand, within GFF290 at 305.514 kb on + strand, within GFF290 at 305.514 kb on + strand, within GFF290 at 305.514 kb on + strand, within GFF290 at 305.515 kb on - strand, within GFF290 at 305.515 kb on - strand, within GFF290 at 305.515 kb on - strand, within GFF290
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 303,247 + GFF287 0.15 +1.2 303,247 + GFF287 0.15 +1.0 303,248 - GFF287 0.15 -0.1 303,248 - GFF287 0.15 +0.1 303,248 - GFF287 0.15 -1.2 303,517 + GFF287 0.41 -0.3 303,517 + GFF287 0.41 +0.4 303,518 - GFF287 0.41 +1.0 303,518 - GFF287 0.41 +0.1 303,518 - GFF287 0.41 -0.3 303,518 - GFF287 0.41 -0.2 303,707 - GFF287 0.59 -0.5 303,728 - GFF287 0.61 -0.9 303,728 - GFF287 0.61 +0.1 303,817 + GFF287 0.70 +1.2 303,817 + GFF287 0.70 -0.4 303,817 + GFF287 0.70 -0.0 303,818 - GFF287 0.70 +1.1 303,863 - GFF287 0.74 -0.2 303,863 - GFF287 0.74 +1.3 303,863 - GFF287 0.74 +0.5 303,923 - GFF287 0.80 -0.2 303,923 - GFF287 0.80 +0.7 303,923 - GFF287 0.80 +0.3 303,923 - GFF287 0.80 +0.2 303,982 + GFF287 0.85 +0.1 304,224 + GFF288 0.16 +0.2 304,225 - GFF288 0.17 -0.9 304,225 - GFF288 0.17 +1.1 304,446 + GFF288 0.62 +1.2 304,447 - GFF288 0.62 -1.4 304,632 + -0.7 304,633 - -0.5 304,633 - +0.7 305,350 - GFF290 0.12 -0.2 305,382 + GFF290 0.20 -0.4 305,382 + GFF290 0.20 +0.3 305,383 - GFF290 0.21 +0.4 305,514 + GFF290 0.57 -0.3 305,514 + GFF290 0.57 +0.0 305,514 + GFF290 0.57 +1.4 305,515 - GFF290 0.57 -0.4 305,515 - GFF290 0.57 +0.8 305,515 - GFF290 0.57 -0.3
Or see this region's nucleotide sequence