Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2771

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2770 and GFF2771 overlap by 4 nucleotidesGFF2771 and GFF2772 are separated by 97 nucleotides GFF2770 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 369,689 to 370,930 GFF2770 GFF2771 - Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21), at 370,927 to 371,400 GFF2771 GFF2772 - FIG000875: Thioredoxin domain-containing protein EC-YbbN, at 371,498 to 372,427 GFF2772 Position (kb) 370 371 372Strain fitness (log2 ratio) -2 -1 0 1at 371.493 kb on - strandat 371.506 kb on + strandat 371.506 kb on + strandat 371.584 kb on + strandat 371.584 kb on + strandat 371.669 kb on + strand, within GFF2772at 371.670 kb on - strand, within GFF2772at 371.670 kb on - strand, within GFF2772at 371.670 kb on - strand, within GFF2772at 372.218 kb on + strand, within GFF2772at 372.219 kb on - strand, within GFF2772at 372.219 kb on - strand, within GFF2772

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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371,493 - -2.4
371,506 + +0.0
371,506 + -0.1
371,584 + +0.2
371,584 + -0.7
371,669 + GFF2772 0.18 +0.7
371,670 - GFF2772 0.18 -1.7
371,670 - GFF2772 0.18 +0.1
371,670 - GFF2772 0.18 -0.3
372,218 + GFF2772 0.77 +0.9
372,219 - GFF2772 0.78 +0.9
372,219 - GFF2772 0.78 -0.2

Or see this region's nucleotide sequence