Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2577

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2575 and GFF2576 overlap by 8 nucleotidesGFF2576 and GFF2577 are separated by 24 nucleotidesGFF2577 and GFF2578 are separated by 232 nucleotidesGFF2578 and GFF2579 overlap by 4 nucleotides GFF2575 - Branched-chain amino acid transport protein AzlC, at 167,063 to 167,806 GFF2575 GFF2576 - Probable transmembrane protein, at 167,799 to 168,134 GFF2576 GFF2577 - Phosphoglycerol transferase I (EC 2.7.8.20), at 168,159 to 170,732 GFF2577 GFF2578 - Two-component system response regulator QseB, at 170,965 to 171,678 GFF2578 GFF2579 - Tricarboxylate transport sensor protein TctE, at 171,675 to 173,021 GFF2579 Position (kb) 168 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1at 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.355 kb on - strand, within GFF2575at 167.396 kb on + strand, within GFF2575at 167.396 kb on + strand, within GFF2575at 167.396 kb on + strand, within GFF2575at 167.397 kb on - strand, within GFF2575at 167.397 kb on - strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.417 kb on + strand, within GFF2575at 167.418 kb on - strand, within GFF2575at 167.418 kb on - strand, within GFF2575at 167.418 kb on - strand, within GFF2575at 167.486 kb on + strand, within GFF2575at 167.486 kb on + strand, within GFF2575at 167.487 kb on - strand, within GFF2575at 167.487 kb on - strand, within GFF2575at 167.487 kb on - strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.513 kb on + strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.514 kb on - strand, within GFF2575at 167.546 kb on - strand, within GFF2575at 167.932 kb on - strand, within GFF2576at 168.102 kb on + strandat 168.103 kb on - strandat 168.181 kb on + strandat 168.182 kb on - strandat 168.197 kb on - strandat 168.271 kb on + strandat 168.272 kb on - strandat 168.272 kb on - strandat 168.272 kb on - strandat 168.272 kb on - strandat 168.331 kb on + strandat 168.331 kb on + strandat 168.331 kb on + strandat 168.332 kb on - strandat 168.332 kb on - strandat 168.568 kb on + strand, within GFF2577at 168.568 kb on + strand, within GFF2577at 168.620 kb on - strand, within GFF2577at 168.670 kb on + strand, within GFF2577at 168.670 kb on + strand, within GFF2577at 168.671 kb on - strand, within GFF2577at 168.923 kb on - strand, within GFF2577at 168.958 kb on + strand, within GFF2577at 169.117 kb on + strand, within GFF2577at 169.117 kb on + strand, within GFF2577at 169.373 kb on - strand, within GFF2577at 169.408 kb on + strand, within GFF2577at 169.408 kb on + strand, within GFF2577at 169.408 kb on + strand, within GFF2577at 169.409 kb on - strand, within GFF2577at 169.409 kb on - strand, within GFF2577at 169.417 kb on + strand, within GFF2577at 169.417 kb on + strand, within GFF2577at 169.418 kb on - strand, within GFF2577at 169.430 kb on - strand, within GFF2577at 169.430 kb on - strand, within GFF2577at 169.430 kb on - strand, within GFF2577at 169.623 kb on + strand, within GFF2577at 169.624 kb on + strand, within GFF2577at 169.624 kb on + strand, within GFF2577at 169.625 kb on - strand, within GFF2577at 169.678 kb on + strand, within GFF2577at 169.714 kb on + strand, within GFF2577at 169.723 kb on + strand, within GFF2577at 169.739 kb on - strand, within GFF2577at 170.781 kb on + strandat 170.781 kb on + strandat 170.781 kb on + strandat 170.782 kb on - strandat 170.874 kb on - strandat 171.277 kb on + strand, within GFF2578at 171.277 kb on + strand, within GFF2578at 171.277 kb on + strand, within GFF2578at 171.277 kb on + strand, within GFF2578at 171.277 kb on + strand, within GFF2578at 171.718 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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167,355 - GFF2575 0.39 +0.6
167,355 - GFF2575 0.39 +0.1
167,355 - GFF2575 0.39 -0.8
167,355 - GFF2575 0.39 -0.1
167,355 - GFF2575 0.39 +0.7
167,396 + GFF2575 0.45 +0.2
167,396 + GFF2575 0.45 -0.2
167,396 + GFF2575 0.45 +0.7
167,397 - GFF2575 0.45 +1.1
167,397 - GFF2575 0.45 +0.2
167,417 + GFF2575 0.48 -0.5
167,417 + GFF2575 0.48 +0.4
167,417 + GFF2575 0.48 +0.1
167,417 + GFF2575 0.48 -0.1
167,417 + GFF2575 0.48 -0.4
167,417 + GFF2575 0.48 +0.0
167,417 + GFF2575 0.48 -1.6
167,418 - GFF2575 0.48 +0.5
167,418 - GFF2575 0.48 -1.2
167,418 - GFF2575 0.48 -0.2
167,486 + GFF2575 0.57 -0.5
167,486 + GFF2575 0.57 -1.7
167,487 - GFF2575 0.57 +0.4
167,487 - GFF2575 0.57 +0.8
167,487 - GFF2575 0.57 -0.2
167,513 + GFF2575 0.60 +0.1
167,513 + GFF2575 0.60 -3.0
167,513 + GFF2575 0.60 -0.2
167,513 + GFF2575 0.60 +0.2
167,514 - GFF2575 0.61 -0.0
167,514 - GFF2575 0.61 -1.6
167,514 - GFF2575 0.61 +0.5
167,514 - GFF2575 0.61 +0.7
167,514 - GFF2575 0.61 -1.5
167,514 - GFF2575 0.61 -0.1
167,514 - GFF2575 0.61 +0.7
167,546 - GFF2575 0.65 -0.5
167,932 - GFF2576 0.40 -0.2
168,102 + +0.2
168,103 - -0.9
168,181 + +0.1
168,182 - -0.1
168,197 - +0.4
168,271 + -0.6
168,272 - +1.2
168,272 - -0.6
168,272 - +0.8
168,272 - -0.0
168,331 + +0.5
168,331 + +0.3
168,331 + -0.5
168,332 - -0.2
168,332 - -1.0
168,568 + GFF2577 0.16 +1.6
168,568 + GFF2577 0.16 +1.4
168,620 - GFF2577 0.18 +0.3
168,670 + GFF2577 0.20 +0.5
168,670 + GFF2577 0.20 +1.6
168,671 - GFF2577 0.20 +0.2
168,923 - GFF2577 0.30 -0.3
168,958 + GFF2577 0.31 +0.1
169,117 + GFF2577 0.37 +0.7
169,117 + GFF2577 0.37 +0.1
169,373 - GFF2577 0.47 +0.5
169,408 + GFF2577 0.49 +0.4
169,408 + GFF2577 0.49 +0.1
169,408 + GFF2577 0.49 +0.2
169,409 - GFF2577 0.49 +0.1
169,409 - GFF2577 0.49 +0.1
169,417 + GFF2577 0.49 +0.8
169,417 + GFF2577 0.49 -1.1
169,418 - GFF2577 0.49 +0.7
169,430 - GFF2577 0.49 +0.0
169,430 - GFF2577 0.49 +1.2
169,430 - GFF2577 0.49 +1.3
169,623 + GFF2577 0.57 -1.0
169,624 + GFF2577 0.57 +0.5
169,624 + GFF2577 0.57 +0.2
169,625 - GFF2577 0.57 +0.2
169,678 + GFF2577 0.59 -1.1
169,714 + GFF2577 0.60 +1.2
169,723 + GFF2577 0.61 +0.5
169,739 - GFF2577 0.61 -0.2
170,781 + -0.9
170,781 + +0.5
170,781 + -1.8
170,782 - -1.1
170,874 - -0.4
171,277 + GFF2578 0.44 -0.7
171,277 + GFF2578 0.44 -0.8
171,277 + GFF2578 0.44 +0.0
171,277 + GFF2578 0.44 +0.3
171,277 + GFF2578 0.44 -0.5
171,718 - -0.3

Or see this region's nucleotide sequence