Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2557

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
145,963	+		GFF2556	0.63	-1.2
145,963	+		GFF2556	0.63	-0.3
145,964	-		GFF2556	0.63	-0.2
145,964	-		GFF2556	0.63	-1.2
145,964	-		GFF2556	0.63	+0.2
146,093	-		GFF2556	0.71	-0.2
146,093	-		GFF2556	0.71	-0.8
146,455	+				+0.0
146,456	-				-0.7
146,456	-				+0.7
146,717	+				-0.6
146,717	+				-0.2
146,717	+				+0.3
146,717	+				+0.1
146,717	+				-1.2
146,741	+				+0.1
146,741	+				-0.2
146,742	-				+0.4
146,774	+				+0.4
146,774	+				+0.5
146,775	-				+1.2
146,845	-				+0.7
147,189	+		GFF2557	0.70	+1.0
147,240	+		GFF2557	0.82	+0.8
147,240	+		GFF2557	0.82	-1.3
147,323	+				+0.6
147,324	-				-2.3
147,324	-				+0.3
147,324	-				+0.2
147,324	-				+0.2
147,395	+				-0.3
147,395	+				-0.2
147,395	+				-0.4
147,395	+				-0.2
147,395	+				-0.3
147,396	-				+0.1
147,396	-				-0.2
147,396	-				+0.8
147,533	+		GFF2558	0.19	+2.0
147,533	+		GFF2558	0.19	+0.3
147,533	-		GFF2558	0.19	+0.1
147,534	-		GFF2558	0.20	+0.3
147,534	-		GFF2558	0.20	-0.5
147,534	-		GFF2558	0.20	+1.7
147,534	-		GFF2558	0.20	+0.6
147,534	-		GFF2558	0.20	-0.1
147,952	+				+0.6
147,952	+				+0.3
147,952	+				+0.2
147,952	+				+0.4
147,952	+				-0.1
147,952	+				+1.3
147,953	-				+1.3
147,953	-				+0.6
147,953	-				+0.1
147,953	-				+0.2
148,241	+		GFF2559	0.14	+0.7
148,241	+		GFF2559	0.14	+0.0
148,241	+		GFF2559	0.14	+0.4