Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2518

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2515 and GFF2516 are separated by 0 nucleotidesGFF2516 and GFF2517 overlap by 43 nucleotidesGFF2517 and GFF2518 are separated by 26 nucleotidesGFF2518 and GFF2519 overlap by 39 nucleotidesGFF2519 and GFF2520 are separated by 39 nucleotidesGFF2520 and GFF2521 are separated by 13 nucleotides GFF2515 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 100,778 to 101,200 GFF2515 GFF2516 - CDP-abequose synthase (Fragment), at 101,201 to 101,866 GFF2516 GFF2517 - hypothetical protein, at 101,824 to 101,949 GFF2517 GFF2518 - Adenylosuccinate lyase (EC 4.3.2.2), at 101,976 to 103,403 GFF2518 GFF2519 - hypothetical protein, at 103,365 to 103,490 GFF2519 GFF2520 - Glutathione S-transferase family protein, at 103,530 to 104,144 GFF2520 GFF2521 - FIG002994: Putative transcriptional regulator, at 104,158 to 104,598 GFF2521 Position (kb) 101 102 103 104Strain fitness (log2 ratio) -2 -1 0 1 2at 100.977 kb on - strand, within GFF2515at 100.977 kb on - strand, within GFF2515at 100.977 kb on - strand, within GFF2515at 101.159 kb on + strandat 101.160 kb on - strandat 101.217 kb on + strandat 101.218 kb on - strandat 101.218 kb on - strandat 101.218 kb on - strandat 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.388 kb on + strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.389 kb on - strand, within GFF2516at 101.583 kb on + strand, within GFF2516at 101.583 kb on + strand, within GFF2516at 101.583 kb on + strand, within GFF2516at 101.583 kb on + strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.584 kb on - strand, within GFF2516at 101.685 kb on + strand, within GFF2516at 101.715 kb on + strand, within GFF2516at 101.715 kb on + strand, within GFF2516at 101.715 kb on + strand, within GFF2516at 101.715 kb on + strand, within GFF2516at 101.716 kb on - strand, within GFF2516at 101.716 kb on - strand, within GFF2516at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.912 kb on + strand, within GFF2517at 101.913 kb on - strand, within GFF2517at 101.913 kb on - strand, within GFF2517at 101.913 kb on - strand, within GFF2517at 101.913 kb on - strand, within GFF2517at 103.414 kb on + strand, within GFF2519at 103.414 kb on + strand, within GFF2519at 103.414 kb on + strand, within GFF2519at 103.415 kb on - strand, within GFF2519at 103.415 kb on - strand, within GFF2519at 103.489 kb on - strandat 103.502 kb on + strandat 103.502 kb on + strandat 103.502 kb on + strandat 103.502 kb on + strandat 103.502 kb on + strandat 103.502 kb on + strandat 103.503 kb on - strandat 103.503 kb on - strandat 103.503 kb on - strandat 103.503 kb on - strandat 103.560 kb on + strandat 103.561 kb on - strandat 103.561 kb on - strandat 103.561 kb on - strandat 103.605 kb on + strand, within GFF2520at 103.605 kb on + strand, within GFF2520at 103.606 kb on - strand, within GFF2520at 103.735 kb on - strand, within GFF2520at 103.735 kb on - strand, within GFF2520at 104.073 kb on + strand, within GFF2520at 104.129 kb on + strandat 104.130 kb on - strandat 104.219 kb on + strand, within GFF2521at 104.219 kb on + strand, within GFF2521at 104.219 kb on + strand, within GFF2521at 104.219 kb on + strand, within GFF2521at 104.219 kb on + strand, within GFF2521at 104.219 kb on + strand, within GFF2521at 104.219 kb on + strand, within GFF2521at 104.219 kb on + strand, within GFF2521at 104.219 kb on + strand, within GFF2521at 104.220 kb on + strand, within GFF2521at 104.220 kb on - strand, within GFF2521at 104.220 kb on - strand, within GFF2521at 104.244 kb on - strand, within GFF2521

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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100,977 - GFF2515 0.47 +0.5
100,977 - GFF2515 0.47 +0.2
100,977 - GFF2515 0.47 +0.2
101,159 + +0.2
101,160 - -0.3
101,217 + +0.1
101,218 - +0.5
101,218 - -0.6
101,218 - +0.3
101,388 + GFF2516 0.28 -0.3
101,388 + GFF2516 0.28 -0.2
101,388 + GFF2516 0.28 +0.7
101,388 + GFF2516 0.28 +1.1
101,388 + GFF2516 0.28 -0.2
101,388 + GFF2516 0.28 -0.1
101,388 + GFF2516 0.28 -0.1
101,389 - GFF2516 0.28 -0.4
101,389 - GFF2516 0.28 +0.1
101,389 - GFF2516 0.28 +0.3
101,389 - GFF2516 0.28 +0.2
101,389 - GFF2516 0.28 -0.4
101,389 - GFF2516 0.28 -1.0
101,389 - GFF2516 0.28 +1.8
101,583 + GFF2516 0.57 -0.6
101,583 + GFF2516 0.57 -0.2
101,583 + GFF2516 0.57 +0.2
101,583 + GFF2516 0.57 +1.3
101,584 - GFF2516 0.58 +0.6
101,584 - GFF2516 0.58 +1.3
101,584 - GFF2516 0.58 -0.1
101,584 - GFF2516 0.58 -1.5
101,584 - GFF2516 0.58 -1.4
101,584 - GFF2516 0.58 -0.5
101,584 - GFF2516 0.58 +0.2
101,584 - GFF2516 0.58 -0.8
101,584 - GFF2516 0.58 -0.7
101,584 - GFF2516 0.58 -0.2
101,584 - GFF2516 0.58 -0.5
101,584 - GFF2516 0.58 +0.3
101,584 - GFF2516 0.58 +0.1
101,685 + GFF2516 0.73 -0.1
101,715 + GFF2516 0.77 +0.1
101,715 + GFF2516 0.77 +0.0
101,715 + GFF2516 0.77 +0.3
101,715 + GFF2516 0.77 -0.1
101,716 - GFF2516 0.77 +1.6
101,716 - GFF2516 0.77 +0.8
101,912 + GFF2517 0.70 -1.8
101,912 + GFF2517 0.70 -0.6
101,912 + GFF2517 0.70 -0.1
101,912 + GFF2517 0.70 +0.9
101,912 + GFF2517 0.70 -1.8
101,912 + GFF2517 0.70 -0.6
101,912 + GFF2517 0.70 -0.5
101,912 + GFF2517 0.70 +0.0
101,912 + GFF2517 0.70 -0.0
101,913 - GFF2517 0.71 +0.3
101,913 - GFF2517 0.71 +0.4
101,913 - GFF2517 0.71 -0.2
101,913 - GFF2517 0.71 -0.7
103,414 + GFF2519 0.39 -0.8
103,414 + GFF2519 0.39 +1.5
103,414 + GFF2519 0.39 -0.5
103,415 - GFF2519 0.40 +0.9
103,415 - GFF2519 0.40 -0.1
103,489 - -0.7
103,502 + -0.3
103,502 + +0.4
103,502 + +0.2
103,502 + -0.1
103,502 + -0.0
103,502 + +1.0
103,503 - -0.4
103,503 - +0.9
103,503 - +0.0
103,503 - -0.5
103,560 + +0.9
103,561 - +1.1
103,561 - +0.7
103,561 - -0.2
103,605 + GFF2520 0.12 -1.2
103,605 + GFF2520 0.12 +1.1
103,606 - GFF2520 0.12 -0.2
103,735 - GFF2520 0.33 +0.2
103,735 - GFF2520 0.33 +0.5
104,073 + GFF2520 0.88 -0.5
104,129 + -0.1
104,130 - +0.8
104,219 + GFF2521 0.14 -0.4
104,219 + GFF2521 0.14 +0.3
104,219 + GFF2521 0.14 +0.4
104,219 + GFF2521 0.14 -1.8
104,219 + GFF2521 0.14 +0.6
104,219 + GFF2521 0.14 +0.3
104,219 + GFF2521 0.14 -1.1
104,219 + GFF2521 0.14 +0.2
104,219 + GFF2521 0.14 +1.3
104,220 + GFF2521 0.14 -0.1
104,220 - GFF2521 0.14 -0.9
104,220 - GFF2521 0.14 +0.1
104,244 - GFF2521 0.20 -0.1

Or see this region's nucleotide sequence