Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2433 and GFF2434 are separated by 67 nucleotides GFF2434 and GFF2435 overlap by 11 nucleotides GFF2435 and GFF2436 overlap by 4 nucleotides GFF2436 and GFF2437 are separated by 65 nucleotides
GFF2433 - LSU ribosomal protein L34p, at 15,515 to 15,649
GFF2433
GFF2434 - Ribonuclease P protein component (EC 3.1.26.5), at 15,717 to 16,136
GFF2434
GFF2435 - Protein YidD, at 16,126 to 16,413
GFF2435
GFF2436 - Inner membrane protein translocase component YidC, long form, at 16,410 to 18,116
GFF2436
GFF2437 - GTPase and tRNA-U34 5-formylation enzyme TrmE, at 18,182 to 19,582
GFF2437
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.237 kb on + strand, within GFF2435 at 16.237 kb on + strand, within GFF2435 at 16.237 kb on + strand, within GFF2435 at 16.282 kb on + strand, within GFF2435 at 16.282 kb on + strand, within GFF2435 at 16.282 kb on + strand, within GFF2435 at 16.282 kb on + strand, within GFF2435 at 16.282 kb on + strand, within GFF2435 at 16.282 kb on + strand, within GFF2435 at 16.282 kb on + strand, within GFF2435 at 18.168 kb on + strand at 18.168 kb on + strand at 18.168 kb on + strand at 18.168 kb on + strand at 18.168 kb on + strand at 18.168 kb on + strand at 18.168 kb on + strand at 18.168 kb on + strand at 18.168 kb on + strand at 18.169 kb on - strand at 18.169 kb on - strand at 18.169 kb on - strand at 18.169 kb on - strand at 18.169 kb on - strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.181 kb on + strand at 18.182 kb on - strand at 18.182 kb on - strand at 18.182 kb on - strand at 18.182 kb on - strand at 18.330 kb on - strand, within GFF2437
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 16,237 + GFF2435 0.39 +1.1 16,237 + GFF2435 0.39 -1.3 16,237 + GFF2435 0.39 -0.3 16,282 + GFF2435 0.54 -0.8 16,282 + GFF2435 0.54 +0.0 16,282 + GFF2435 0.54 -0.2 16,282 + GFF2435 0.54 +0.3 16,282 + GFF2435 0.54 +0.3 16,282 + GFF2435 0.54 +0.0 16,282 + GFF2435 0.54 -0.7 18,168 + +0.1 18,168 + +0.5 18,168 + -0.5 18,168 + -0.4 18,168 + +1.3 18,168 + -0.1 18,168 + +0.0 18,168 + -1.7 18,168 + +0.2 18,169 - +1.8 18,169 - -0.1 18,169 - +0.2 18,169 - -0.2 18,169 - +0.3 18,181 + +0.2 18,181 + +0.4 18,181 + +1.2 18,181 + +0.7 18,181 + +0.7 18,181 + +0.4 18,181 + -0.1 18,181 + -0.8 18,181 + -0.8 18,181 + +0.2 18,181 + -0.1 18,181 + -1.8 18,181 + -0.4 18,181 + +0.6 18,182 - -0.4 18,182 - -1.7 18,182 - +1.2 18,182 - +0.1 18,330 - GFF2437 0.11 +0.9
Or see this region's nucleotide sequence