Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF236 and GFF237 overlap by 4 nucleotides GFF237 and GFF238 are separated by 30 nucleotides GFF238 and GFF239 are separated by 28 nucleotides GFF239 and GFF240 overlap by 7 nucleotides
GFF236 - Alkylhydroperoxidase AhpD core, at 257,198 to 257,656
GFF236
GFF237 - Putative secreted protein, at 257,653 to 258,393
GFF237
GFF238 - Enoyl-CoA hydratase (EC 4.2.1.17), at 258,424 to 259,113
GFF238
GFF239 - NAD(P)H-flavin oxidoreductase, at 259,142 to 259,729
GFF239
GFF240 - SlyX protein, at 259,723 to 259,956
GFF240
Position (kb) 258
259
260 Strain fitness (log2 ratio) -1
0
1 at 257.441 kb on + strand, within GFF236 at 257.441 kb on + strand, within GFF236 at 257.442 kb on - strand, within GFF236 at 258.025 kb on + strand, within GFF237 at 258.026 kb on - strand, within GFF237 at 258.026 kb on - strand, within GFF237 at 258.026 kb on - strand, within GFF237 at 258.301 kb on + strand, within GFF237 at 258.301 kb on + strand, within GFF237 at 258.302 kb on - strand, within GFF237 at 258.411 kb on + strand at 259.184 kb on + strand at 259.560 kb on - strand, within GFF239 at 259.667 kb on + strand, within GFF239 at 259.688 kb on + strand at 259.689 kb on - strand at 259.727 kb on + strand at 259.884 kb on - strand, within GFF240 at 259.884 kb on - strand, within GFF240
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 257,441 + GFF236 0.53 -1.2 257,441 + GFF236 0.53 +0.1 257,442 - GFF236 0.53 -0.1 258,025 + GFF237 0.50 +0.9 258,026 - GFF237 0.50 +0.7 258,026 - GFF237 0.50 -0.0 258,026 - GFF237 0.50 -1.1 258,301 + GFF237 0.87 +0.3 258,301 + GFF237 0.87 -0.5 258,302 - GFF237 0.88 -1.6 258,411 + -0.2 259,184 + -1.4 259,560 - GFF239 0.71 -1.1 259,667 + GFF239 0.89 +0.3 259,688 + +0.2 259,689 - +0.8 259,727 + +0.1 259,884 - GFF240 0.69 +0.2 259,884 - GFF240 0.69 -0.1
Or see this region's nucleotide sequence