Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2327

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,211,191	+		GFF2326	0.29	+0.3
1,211,258	-		GFF2326	0.36	+0.3
1,211,258	-		GFF2326	0.36	+0.4
1,211,278	+		GFF2326	0.38	-1.7
1,211,278	+		GFF2326	0.38	+0.0
1,211,335	+		GFF2326	0.43	-0.6
1,211,393	-		GFF2326	0.49	+1.2
1,211,393	-		GFF2326	0.49	-0.2
1,211,599	+		GFF2326	0.70	+0.7
1,211,600	-		GFF2326	0.70	+0.7
1,211,767	+		GFF2326	0.87	-0.5
1,211,768	-		GFF2326	0.87	+0.0
1,211,907	+				-0.6
1,211,907	+				+0.2
1,211,907	+				+0.1
1,212,230	+		GFF2327	0.29	-0.6
1,212,231	-		GFF2327	0.29	-1.8
1,212,231	-		GFF2327	0.29	+0.5
1,213,159	-		GFF2328	0.37	-0.1
1,213,290	+		GFF2328	0.64	+1.3
1,213,290	+		GFF2328	0.64	+0.1
1,213,291	-		GFF2328	0.65	-0.4
1,213,456	-				+0.0
1,213,456	-				-0.3
1,213,706	-		GFF2329	0.20	-2.0
1,213,717	+		GFF2329	0.20	+1.1
1,213,718	-		GFF2329	0.20	+0.0
1,213,718	-		GFF2329	0.20	-0.6
1,213,945	+		GFF2329	0.38	+0.4