Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2214 and GFF2215 overlap by 4 nucleotides GFF2215 and GFF2216 overlap by 10 nucleotides GFF2216 and GFF2217 overlap by 4 nucleotides GFF2217 and GFF2218 are separated by 26 nucleotides
GFF2214 - [NiFe] hydrogenase metallocenter assembly protein HypD, at 1,103,994 to 1,105,154
GFF2214
GFF2215 - [NiFe] hydrogenase metallocenter assembly protein HypC, at 1,105,151 to 1,105,387
GFF2215
GFF2216 - [NiFe] hydrogenase metallocenter assembly protein HypF, at 1,105,378 to 1,106,553
GFF2216
GFF2217 - [NiFe] hydrogenase nickel incorporation-associated protein HypB, at 1,106,550 to 1,107,410
GFF2217
GFF2218 - [NiFe] hydrogenase nickel incorporation protein HypA, at 1,107,437 to 1,107,784
GFF2218
Position (kb) 1105
1106
1107 Strain fitness (log2 ratio) -1
0
1 at 1104.517 kb on + strand, within GFF2214 at 1104.799 kb on + strand, within GFF2214 at 1104.884 kb on - strand, within GFF2214 at 1105.067 kb on - strand at 1105.263 kb on + strand, within GFF2215 at 1105.379 kb on + strand at 1105.380 kb on - strand at 1105.380 kb on - strand at 1106.774 kb on - strand, within GFF2217 at 1107.399 kb on + strand at 1107.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 1,104,517 + GFF2214 0.45 -0.1 1,104,799 + GFF2214 0.69 +0.1 1,104,884 - GFF2214 0.77 +0.2 1,105,067 - +0.5 1,105,263 + GFF2215 0.47 -0.2 1,105,379 + +0.0 1,105,380 - +0.4 1,105,380 - +0.1 1,106,774 - GFF2217 0.26 +0.5 1,107,399 + +0.3 1,107,400 - +1.5
Or see this region's nucleotide sequence