Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2185

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,076,110	-		GFF2184	0.12	+0.0
1,076,260	-		GFF2184	0.27	-0.1
1,076,322	+		GFF2184	0.34	-0.6
1,076,323	-		GFF2184	0.34	-0.2
1,076,751	+		GFF2184	0.78	-0.1
1,076,751	+		GFF2184	0.78	-1.6
1,076,752	-		GFF2184	0.78	+0.2
1,076,752	-		GFF2184	0.78	-0.4
1,076,752	-		GFF2184	0.78	-0.9
1,076,905	-				+0.0
1,076,905	-				-0.1
1,076,928	+				+0.0
1,076,929	-				+0.5
1,076,929	-				+0.0
1,077,079	+				-0.0
1,077,080	-				-1.0
1,077,318	+		GFF2185	0.31	+0.0
1,077,527	-		GFF2185	0.50	-0.4
1,077,527	-		GFF2185	0.50	+0.0
1,077,527	-		GFF2185	0.50	+0.9
1,077,707	-		GFF2185	0.66	+0.9
1,077,707	-		GFF2185	0.66	+2.1
1,077,707	-		GFF2185	0.66	+1.3
1,077,824	-		GFF2185	0.77	-1.8
1,077,861	+		GFF2185	0.80	+1.3
1,078,082	+				+0.8
1,078,082	+				+0.1
1,078,082	+				-0.3
1,078,083	-				+0.9
1,078,104	+				-1.8
1,078,104	+				-0.1
1,078,104	+				+0.1
1,078,137	+		GFF2186	0.13	+0.8
1,078,137	+		GFF2186	0.13	-0.2
1,078,138	-		GFF2186	0.13	-0.2
1,078,138	-		GFF2186	0.13	-0.1
1,078,138	-		GFF2186	0.13	-2.3
1,078,138	-		GFF2186	0.13	-0.7
1,078,138	-		GFF2186	0.13	+0.1
1,078,138	-		GFF2186	0.13	+0.1
1,078,138	-		GFF2186	0.13	+0.4
1,078,323	+		GFF2186	0.56	-0.1
1,078,443	+		GFF2186	0.83	+0.9
1,078,443	+		GFF2186	0.83	+0.2
1,078,444	-		GFF2186	0.83	-0.8
1,078,444	-		GFF2186	0.83	-0.2
1,078,444	-		GFF2186	0.83	+0.1
1,078,444	-		GFF2186	0.83	-0.7
1,078,444	-		GFF2186	0.83	-1.1
1,078,521	+				+0.2
1,078,521	+				+1.1
1,078,521	+				+0.7
1,078,522	-				+0.7
1,078,522	-				+0.2
1,078,522	-				+0.2
1,078,522	-				-0.9
1,078,593	+				-1.1
1,078,593	+				+0.2
1,078,593	+				-0.1
1,078,593	+				+0.6
1,078,593	+				+2.2
1,078,594	-				-0.3
1,078,594	-				+0.8
1,078,713	+				-3.0
1,078,713	+				+0.8
1,078,779	+		GFF2187	0.36	+0.6
1,078,780	-		GFF2187	0.36	-1.7
1,078,827	+		GFF2187	0.56	+0.3