Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2155

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
1,045,234	-				-2.2
1,045,234	-				+0.1
1,045,357	-				+0.4
1,045,534	-		GFF2154	0.27	+0.5
1,045,791	+		GFF2154	0.66	-0.1
1,045,791	+		GFF2154	0.66	-2.1
1,045,815	+		GFF2154	0.69	-0.3
1,045,815	+		GFF2154	0.69	-0.3
1,045,860	+		GFF2154	0.76	-0.1
1,045,861	-		GFF2154	0.76	+1.1
1,045,861	-		GFF2154	0.76	+0.2
1,046,028	+				+0.3
1,046,029	-				-0.2
1,046,029	-				+0.2
1,046,029	-				+0.4
1,046,029	-				-0.4
1,046,107	+				+0.4
1,046,141	+				+0.2
1,046,965	-				+1.5
1,046,965	-				-0.6
1,047,054	-				+0.1
1,047,066	-				+0.4
1,047,296	+		GFF2156	0.28	+1.1
1,047,404	+		GFF2156	0.37	-0.0
1,047,404	+		GFF2156	0.37	-0.7
1,047,405	-		GFF2156	0.37	-0.1
1,047,405	-		GFF2156	0.37	-0.5
1,047,405	-		GFF2156	0.37	-0.2
1,047,405	-		GFF2156	0.37	-0.0
1,047,947	+		GFF2156	0.85	+0.2
1,047,948	-		GFF2156	0.85	+0.7