Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2046 and GFF2047 are separated by 76 nucleotides GFF2047 and GFF2048 are separated by 86 nucleotides GFF2048 and GFF2049 are separated by 7 nucleotides
GFF2046 - Two-component hybrid sensor and regulator, at 926,035 to 927,804
GFF2046
GFF2047 - hypothetical protein, at 927,881 to 930,343
GFF2047
GFF2048 - Glutathione S-transferase (EC 2.5.1.18), at 930,430 to 931,035
GFF2048
GFF2049 - Permeases of the major facilitator superfamily, at 931,043 to 932,263
GFF2049
Position (kb) 927
928
929
930
931 Strain fitness (log2 ratio) -2
-1
0
1
2 at 927.076 kb on + strand, within GFF2046 at 927.076 kb on + strand, within GFF2046 at 927.076 kb on + strand, within GFF2046 at 927.077 kb on - strand, within GFF2046 at 927.077 kb on - strand, within GFF2046 at 927.199 kb on + strand, within GFF2046 at 927.376 kb on + strand, within GFF2046 at 927.839 kb on - strand at 928.172 kb on + strand, within GFF2047 at 928.173 kb on - strand, within GFF2047 at 928.173 kb on - strand, within GFF2047 at 928.173 kb on - strand, within GFF2047 at 928.173 kb on - strand, within GFF2047 at 928.484 kb on + strand, within GFF2047 at 928.484 kb on + strand, within GFF2047 at 928.484 kb on + strand, within GFF2047 at 928.485 kb on - strand, within GFF2047 at 928.547 kb on + strand, within GFF2047 at 928.547 kb on + strand, within GFF2047 at 928.548 kb on - strand, within GFF2047 at 928.634 kb on + strand, within GFF2047 at 928.634 kb on + strand, within GFF2047 at 928.635 kb on - strand, within GFF2047 at 928.758 kb on - strand, within GFF2047 at 928.796 kb on + strand, within GFF2047 at 928.796 kb on + strand, within GFF2047 at 928.796 kb on + strand, within GFF2047 at 928.796 kb on + strand, within GFF2047 at 928.797 kb on - strand, within GFF2047 at 928.799 kb on + strand, within GFF2047 at 928.800 kb on - strand, within GFF2047 at 928.800 kb on - strand, within GFF2047 at 928.976 kb on + strand, within GFF2047 at 928.976 kb on + strand, within GFF2047 at 929.144 kb on + strand, within GFF2047 at 929.144 kb on + strand, within GFF2047 at 929.145 kb on - strand, within GFF2047 at 929.145 kb on - strand, within GFF2047 at 929.145 kb on - strand, within GFF2047 at 929.237 kb on + strand, within GFF2047 at 929.237 kb on + strand, within GFF2047 at 930.341 kb on + strand at 930.374 kb on + strand at 930.439 kb on + strand at 930.440 kb on - strand at 930.440 kb on - strand at 930.440 kb on - strand at 930.442 kb on + strand at 930.556 kb on + strand, within GFF2048 at 930.559 kb on + strand, within GFF2048 at 930.559 kb on + strand, within GFF2048 at 930.559 kb on + strand, within GFF2048 at 930.559 kb on + strand, within GFF2048 at 930.580 kb on + strand, within GFF2048 at 930.580 kb on + strand, within GFF2048 at 930.580 kb on + strand, within GFF2048 at 930.581 kb on - strand, within GFF2048 at 930.643 kb on + strand, within GFF2048 at 930.643 kb on + strand, within GFF2048 at 930.643 kb on + strand, within GFF2048 at 930.643 kb on + strand, within GFF2048 at 930.643 kb on + strand, within GFF2048 at 930.644 kb on - strand, within GFF2048 at 930.862 kb on + strand, within GFF2048 at 930.862 kb on + strand, within GFF2048 at 930.862 kb on + strand, within GFF2048 at 930.863 kb on - strand, within GFF2048 at 930.899 kb on - strand, within GFF2048 at 931.033 kb on + strand at 931.033 kb on + strand at 931.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 927,076 + GFF2046 0.59 -0.0 927,076 + GFF2046 0.59 -0.6 927,076 + GFF2046 0.59 +0.8 927,077 - GFF2046 0.59 -1.5 927,077 - GFF2046 0.59 -0.3 927,199 + GFF2046 0.66 +0.7 927,376 + GFF2046 0.76 -0.9 927,839 - -0.5 928,172 + GFF2047 0.12 -1.2 928,173 - GFF2047 0.12 -0.7 928,173 - GFF2047 0.12 -0.7 928,173 - GFF2047 0.12 -1.2 928,173 - GFF2047 0.12 -0.4 928,484 + GFF2047 0.24 -1.8 928,484 + GFF2047 0.24 +0.3 928,484 + GFF2047 0.24 +0.6 928,485 - GFF2047 0.25 +0.2 928,547 + GFF2047 0.27 +1.3 928,547 + GFF2047 0.27 +0.3 928,548 - GFF2047 0.27 -1.7 928,634 + GFF2047 0.31 -0.1 928,634 + GFF2047 0.31 -1.1 928,635 - GFF2047 0.31 +0.0 928,758 - GFF2047 0.36 +2.3 928,796 + GFF2047 0.37 -0.1 928,796 + GFF2047 0.37 +0.2 928,796 + GFF2047 0.37 -0.2 928,796 + GFF2047 0.37 +0.4 928,797 - GFF2047 0.37 -0.1 928,799 + GFF2047 0.37 -0.5 928,800 - GFF2047 0.37 +0.1 928,800 - GFF2047 0.37 +0.2 928,976 + GFF2047 0.44 -0.9 928,976 + GFF2047 0.44 +0.9 929,144 + GFF2047 0.51 -0.5 929,144 + GFF2047 0.51 -1.1 929,145 - GFF2047 0.51 -0.3 929,145 - GFF2047 0.51 -1.5 929,145 - GFF2047 0.51 +0.1 929,237 + GFF2047 0.55 +0.6 929,237 + GFF2047 0.55 -0.8 930,341 + +0.4 930,374 + +1.0 930,439 + -0.4 930,440 - -0.2 930,440 - -0.1 930,440 - +0.7 930,442 + -0.1 930,556 + GFF2048 0.21 +0.0 930,559 + GFF2048 0.21 -0.1 930,559 + GFF2048 0.21 -1.1 930,559 + GFF2048 0.21 -0.4 930,559 + GFF2048 0.21 -0.8 930,580 + GFF2048 0.25 +0.7 930,580 + GFF2048 0.25 +0.6 930,580 + GFF2048 0.25 -0.3 930,581 - GFF2048 0.25 +0.5 930,643 + GFF2048 0.35 +0.2 930,643 + GFF2048 0.35 -1.1 930,643 + GFF2048 0.35 -0.7 930,643 + GFF2048 0.35 +0.1 930,643 + GFF2048 0.35 -0.2 930,644 - GFF2048 0.35 +1.5 930,862 + GFF2048 0.71 +1.2 930,862 + GFF2048 0.71 +1.2 930,862 + GFF2048 0.71 +0.0 930,863 - GFF2048 0.71 +0.8 930,899 - GFF2048 0.77 -0.1 931,033 + +0.4 931,033 + -0.2 931,034 - +1.1
Or see this region's nucleotide sequence