Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2010

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2009 and GFF2010 overlap by 17 nucleotidesGFF2010 and GFF2011 are separated by 304 nucleotides GFF2009 - Sensor histidine kinase, at 883,793 to 885,670 GFF2009 GFF2010 - DNA-binding response regulator, LuxR family, at 885,654 to 886,274 GFF2010 GFF2011 - glycoprotein/polysaccharide metabolism, at 886,579 to 887,388 GFF2011 Position (kb) 885 886 887Strain fitness (log2 ratio) -2 -1 0 1 2at 884.700 kb on + strand, within GFF2009at 884.700 kb on + strand, within GFF2009at 884.700 kb on + strand, within GFF2009at 884.700 kb on + strand, within GFF2009at 884.700 kb on + strand, within GFF2009at 884.700 kb on + strand, within GFF2009at 884.700 kb on + strand, within GFF2009at 884.700 kb on + strand, within GFF2009at 884.701 kb on - strand, within GFF2009at 884.701 kb on - strand, within GFF2009at 884.701 kb on - strand, within GFF2009at 884.701 kb on - strand, within GFF2009at 884.701 kb on - strand, within GFF2009at 884.719 kb on - strand, within GFF2009at 884.719 kb on - strand, within GFF2009at 884.719 kb on - strand, within GFF2009at 884.719 kb on - strand, within GFF2009at 884.900 kb on + strand, within GFF2009at 884.902 kb on - strand, within GFF2009at 884.902 kb on - strand, within GFF2009at 884.902 kb on - strand, within GFF2009at 884.902 kb on - strand, within GFF2009at 885.063 kb on + strand, within GFF2009at 885.063 kb on + strand, within GFF2009at 885.063 kb on + strand, within GFF2009at 885.064 kb on - strand, within GFF2009at 885.064 kb on - strand, within GFF2009at 885.064 kb on - strand, within GFF2009at 885.064 kb on - strand, within GFF2009at 885.180 kb on + strand, within GFF2009at 885.180 kb on + strand, within GFF2009at 885.180 kb on + strand, within GFF2009at 885.180 kb on + strand, within GFF2009at 885.181 kb on - strand, within GFF2009at 885.181 kb on - strand, within GFF2009at 885.181 kb on - strand, within GFF2009at 885.181 kb on - strand, within GFF2009at 885.181 kb on - strand, within GFF2009at 885.193 kb on + strand, within GFF2009at 885.246 kb on + strand, within GFF2009at 885.363 kb on + strand, within GFF2009at 885.363 kb on + strand, within GFF2009at 885.363 kb on + strand, within GFF2009at 885.364 kb on - strand, within GFF2009at 885.364 kb on - strand, within GFF2009at 885.364 kb on - strand, within GFF2009at 885.364 kb on - strand, within GFF2009at 885.364 kb on - strand, within GFF2009at 885.364 kb on - strand, within GFF2009at 885.364 kb on - strand, within GFF2009at 885.364 kb on - strand, within GFF2009at 885.423 kb on + strand, within GFF2009at 885.423 kb on + strand, within GFF2009at 885.655 kb on + strandat 885.656 kb on - strandat 885.691 kb on + strandat 885.691 kb on + strandat 885.691 kb on + strandat 885.691 kb on + strandat 885.691 kb on + strandat 885.691 kb on + strandat 885.692 kb on - strandat 885.692 kb on - strandat 885.692 kb on - strandat 885.692 kb on - strandat 886.318 kb on + strandat 886.318 kb on + strandat 886.319 kb on - strandat 886.319 kb on - strandat 886.391 kb on + strandat 886.391 kb on + strandat 886.392 kb on - strandat 886.445 kb on + strandat 886.445 kb on + strandat 886.446 kb on - strandat 886.446 kb on - strandat 886.446 kb on - strandat 886.446 kb on - strandat 886.446 kb on - strandat 886.510 kb on + strandat 886.510 kb on + strandat 886.510 kb on + strandat 886.510 kb on + strandat 886.510 kb on + strandat 886.510 kb on + strandat 886.510 kb on + strandat 886.510 kb on + strandat 886.510 kb on + strandat 886.510 kb on + strandat 886.510 kb on + strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.511 kb on - strandat 886.552 kb on - strandat 886.781 kb on + strand, within GFF2011at 886.781 kb on + strand, within GFF2011at 886.781 kb on + strand, within GFF2011at 886.781 kb on + strand, within GFF2011at 886.781 kb on + strand, within GFF2011at 886.781 kb on + strand, within GFF2011at 886.781 kb on + strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 886.782 kb on - strand, within GFF2011at 887.012 kb on + strand, within GFF2011at 887.013 kb on - strand, within GFF2011at 887.013 kb on - strand, within GFF2011at 887.013 kb on - strand, within GFF2011at 887.013 kb on - strand, within GFF2011at 887.013 kb on - strand, within GFF2011at 887.030 kb on + strand, within GFF2011at 887.030 kb on + strand, within GFF2011at 887.030 kb on + strand, within GFF2011at 887.030 kb on + strand, within GFF2011at 887.030 kb on + strand, within GFF2011at 887.030 kb on + strand, within GFF2011at 887.030 kb on + strand, within GFF2011at 887.031 kb on - strand, within GFF2011at 887.031 kb on - strand, within GFF2011at 887.031 kb on - strand, within GFF2011at 887.031 kb on - strand, within GFF2011at 887.031 kb on - strand, within GFF2011at 887.031 kb on - strand, within GFF2011at 887.031 kb on - strand, within GFF2011at 887.031 kb on - strand, within GFF2011at 887.031 kb on - strand, within GFF2011at 887.070 kb on + strand, within GFF2011at 887.072 kb on + strand, within GFF2011at 887.072 kb on + strand, within GFF2011at 887.072 kb on + strand, within GFF2011at 887.072 kb on + strand, within GFF2011at 887.073 kb on - strand, within GFF2011at 887.073 kb on - strand, within GFF2011at 887.073 kb on - strand, within GFF2011at 887.073 kb on - strand, within GFF2011at 887.073 kb on - strand, within GFF2011at 887.073 kb on - strand, within GFF2011at 887.273 kb on + strand, within GFF2011at 887.273 kb on + strand, within GFF2011at 887.273 kb on + strand, within GFF2011at 887.273 kb on + strand, within GFF2011at 887.273 kb on + strand, within GFF2011at 887.274 kb on - strand, within GFF2011at 887.274 kb on - strand, within GFF2011at 887.274 kb on - strand, within GFF2011

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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884,700 + GFF2009 0.48 -0.1
884,700 + GFF2009 0.48 -0.2
884,700 + GFF2009 0.48 -0.6
884,700 + GFF2009 0.48 +0.8
884,700 + GFF2009 0.48 -0.7
884,700 + GFF2009 0.48 -1.6
884,700 + GFF2009 0.48 -1.7
884,700 + GFF2009 0.48 +0.3
884,701 - GFF2009 0.48 -0.5
884,701 - GFF2009 0.48 +0.9
884,701 - GFF2009 0.48 -0.0
884,701 - GFF2009 0.48 +0.1
884,701 - GFF2009 0.48 +0.1
884,719 - GFF2009 0.49 +0.1
884,719 - GFF2009 0.49 -1.4
884,719 - GFF2009 0.49 +0.1
884,719 - GFF2009 0.49 -0.0
884,900 + GFF2009 0.59 -0.2
884,902 - GFF2009 0.59 -0.8
884,902 - GFF2009 0.59 +1.1
884,902 - GFF2009 0.59 +0.0
884,902 - GFF2009 0.59 +0.2
885,063 + GFF2009 0.68 +0.7
885,063 + GFF2009 0.68 +0.5
885,063 + GFF2009 0.68 +0.2
885,064 - GFF2009 0.68 +0.2
885,064 - GFF2009 0.68 -0.7
885,064 - GFF2009 0.68 -0.1
885,064 - GFF2009 0.68 -0.1
885,180 + GFF2009 0.74 +0.7
885,180 + GFF2009 0.74 -0.7
885,180 + GFF2009 0.74 -0.3
885,180 + GFF2009 0.74 -1.4
885,181 - GFF2009 0.74 -0.3
885,181 - GFF2009 0.74 -0.4
885,181 - GFF2009 0.74 +0.3
885,181 - GFF2009 0.74 -0.0
885,181 - GFF2009 0.74 -0.2
885,193 + GFF2009 0.75 +0.5
885,246 + GFF2009 0.77 +0.3
885,363 + GFF2009 0.84 -0.6
885,363 + GFF2009 0.84 -0.4
885,363 + GFF2009 0.84 -0.7
885,364 - GFF2009 0.84 -0.4
885,364 - GFF2009 0.84 +0.0
885,364 - GFF2009 0.84 +0.2
885,364 - GFF2009 0.84 -0.2
885,364 - GFF2009 0.84 +2.0
885,364 - GFF2009 0.84 +0.3
885,364 - GFF2009 0.84 +0.2
885,364 - GFF2009 0.84 -0.6
885,423 + GFF2009 0.87 -0.4
885,423 + GFF2009 0.87 +0.4
885,655 + -0.5
885,656 - +0.2
885,691 + +1.1
885,691 + +0.6
885,691 + +0.3
885,691 + -0.3
885,691 + +0.5
885,691 + +0.2
885,692 - +0.8
885,692 - -0.1
885,692 - +0.2
885,692 - -0.5
886,318 + -1.5
886,318 + +0.2
886,319 - -0.2
886,319 - -0.2
886,391 + +1.0
886,391 + -1.3
886,392 - -1.1
886,445 + -0.1
886,445 + +0.0
886,446 - -1.7
886,446 - -0.3
886,446 - +0.4
886,446 - -0.5
886,446 - +0.0
886,510 + -1.4
886,510 + -0.5
886,510 + -0.9
886,510 + +0.9
886,510 + +0.2
886,510 + +0.2
886,510 + +1.7
886,510 + -0.3
886,510 + +1.2
886,510 + -0.4
886,510 + +0.2
886,511 - +0.3
886,511 - -0.9
886,511 - +0.3
886,511 - -1.1
886,511 - +0.2
886,511 - -0.3
886,511 - -1.1
886,511 - +0.5
886,511 - -0.1
886,511 - -0.4
886,511 - +0.6
886,511 - +0.2
886,511 - -0.1
886,511 - -0.2
886,552 - -0.5
886,781 + GFF2011 0.25 -1.2
886,781 + GFF2011 0.25 +1.2
886,781 + GFF2011 0.25 -0.1
886,781 + GFF2011 0.25 -0.6
886,781 + GFF2011 0.25 +0.6
886,781 + GFF2011 0.25 +0.8
886,781 + GFF2011 0.25 -0.2
886,782 - GFF2011 0.25 -1.7
886,782 - GFF2011 0.25 -0.1
886,782 - GFF2011 0.25 -1.0
886,782 - GFF2011 0.25 +0.4
886,782 - GFF2011 0.25 +0.9
886,782 - GFF2011 0.25 -1.3
886,782 - GFF2011 0.25 -0.1
886,782 - GFF2011 0.25 +0.4
886,782 - GFF2011 0.25 +0.0
886,782 - GFF2011 0.25 +0.2
886,782 - GFF2011 0.25 -2.2
887,012 + GFF2011 0.53 +0.6
887,013 - GFF2011 0.54 +0.3
887,013 - GFF2011 0.54 -0.1
887,013 - GFF2011 0.54 -0.9
887,013 - GFF2011 0.54 -0.3
887,013 - GFF2011 0.54 -0.3
887,030 + GFF2011 0.56 +0.8
887,030 + GFF2011 0.56 -0.1
887,030 + GFF2011 0.56 +0.3
887,030 + GFF2011 0.56 -0.0
887,030 + GFF2011 0.56 +0.1
887,030 + GFF2011 0.56 -0.8
887,030 + GFF2011 0.56 +0.5
887,031 - GFF2011 0.56 +0.2
887,031 - GFF2011 0.56 -0.5
887,031 - GFF2011 0.56 +0.3
887,031 - GFF2011 0.56 +0.7
887,031 - GFF2011 0.56 +0.1
887,031 - GFF2011 0.56 -0.5
887,031 - GFF2011 0.56 -0.1
887,031 - GFF2011 0.56 +0.6
887,031 - GFF2011 0.56 -0.3
887,070 + GFF2011 0.61 -0.5
887,072 + GFF2011 0.61 -0.2
887,072 + GFF2011 0.61 -1.1
887,072 + GFF2011 0.61 +0.1
887,072 + GFF2011 0.61 -0.5
887,073 - GFF2011 0.61 +0.2
887,073 - GFF2011 0.61 -0.1
887,073 - GFF2011 0.61 +0.9
887,073 - GFF2011 0.61 -0.1
887,073 - GFF2011 0.61 -2.2
887,073 - GFF2011 0.61 -1.4
887,273 + GFF2011 0.86 -0.2
887,273 + GFF2011 0.86 -0.3
887,273 + GFF2011 0.86 +1.2
887,273 + GFF2011 0.86 +0.5
887,273 + GFF2011 0.86 +0.6
887,274 - GFF2011 0.86 -0.9
887,274 - GFF2011 0.86 -0.2
887,274 - GFF2011 0.86 -0.0

Or see this region's nucleotide sequence