Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1915

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1914 and GFF1915 are separated by 0 nucleotidesGFF1915 and GFF1916 are separated by 209 nucleotides GFF1914 - FIG00931613: hypothetical protein, at 786,963 to 788,510 GFF1914 GFF1915 - Alanine racemase (EC 5.1.1.1), at 788,511 to 789,623 GFF1915 GFF1916 - Probable transmembrane protein, at 789,833 to 791,104 GFF1916 Position (kb) 788 789 790Strain fitness (log2 ratio) -2 -1 0 1at 787.695 kb on + strand, within GFF1914at 787.696 kb on - strand, within GFF1914at 787.696 kb on - strand, within GFF1914at 787.696 kb on - strand, within GFF1914at 787.713 kb on + strand, within GFF1914at 787.714 kb on - strand, within GFF1914at 788.127 kb on + strand, within GFF1914at 788.166 kb on + strand, within GFF1914at 788.166 kb on + strand, within GFF1914at 788.167 kb on - strand, within GFF1914at 788.167 kb on - strand, within GFF1914at 788.236 kb on - strand, within GFF1914at 788.298 kb on + strand, within GFF1914at 788.299 kb on - strand, within GFF1914at 788.299 kb on - strand, within GFF1914at 788.349 kb on + strand, within GFF1914at 788.349 kb on + strand, within GFF1914at 788.349 kb on + strand, within GFF1914at 788.349 kb on + strand, within GFF1914at 788.350 kb on - strand, within GFF1914at 788.376 kb on + strandat 788.376 kb on + strandat 788.377 kb on - strandat 788.377 kb on - strandat 789.727 kb on + strandat 789.727 kb on + strandat 789.727 kb on + strandat 789.728 kb on - strandat 789.848 kb on + strandat 789.848 kb on + strandat 789.848 kb on + strandat 789.848 kb on + strandat 789.848 kb on + strandat 789.849 kb on - strandat 789.849 kb on - strandat 789.849 kb on - strandat 789.849 kb on - strandat 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.983 kb on + strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 789.984 kb on - strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.115 kb on + strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.116 kb on - strand, within GFF1916at 790.145 kb on + strand, within GFF1916at 790.145 kb on + strand, within GFF1916at 790.146 kb on - strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.160 kb on + strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.161 kb on - strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.367 kb on + strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.368 kb on - strand, within GFF1916at 790.556 kb on + strand, within GFF1916at 790.557 kb on - strand, within GFF1916at 790.557 kb on - strand, within GFF1916at 790.557 kb on - strand, within GFF1916at 790.592 kb on + strand, within GFF1916

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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787,695 + GFF1914 0.47 -0.1
787,696 - GFF1914 0.47 +0.7
787,696 - GFF1914 0.47 +0.3
787,696 - GFF1914 0.47 -1.9
787,713 + GFF1914 0.48 -1.0
787,714 - GFF1914 0.49 +0.4
788,127 + GFF1914 0.75 -1.5
788,166 + GFF1914 0.78 -0.0
788,166 + GFF1914 0.78 +0.5
788,167 - GFF1914 0.78 -1.7
788,167 - GFF1914 0.78 -0.1
788,236 - GFF1914 0.82 -1.3
788,298 + GFF1914 0.86 +0.9
788,299 - GFF1914 0.86 -0.6
788,299 - GFF1914 0.86 -0.7
788,349 + GFF1914 0.90 +1.7
788,349 + GFF1914 0.90 +0.8
788,349 + GFF1914 0.90 -1.7
788,349 + GFF1914 0.90 -0.6
788,350 - GFF1914 0.90 +1.3
788,376 + -0.1
788,376 + +0.2
788,377 - -1.1
788,377 - +1.3
789,727 + -0.1
789,727 + -0.9
789,727 + -0.3
789,728 - -0.5
789,848 + -0.5
789,848 + -1.5
789,848 + +0.4
789,848 + -0.6
789,848 + -0.4
789,849 - -1.1
789,849 - -0.7
789,849 - +0.5
789,849 - -1.3
789,983 + GFF1916 0.12 -0.4
789,983 + GFF1916 0.12 -0.9
789,983 + GFF1916 0.12 -0.2
789,983 + GFF1916 0.12 -1.0
789,983 + GFF1916 0.12 -1.3
789,983 + GFF1916 0.12 -0.8
789,983 + GFF1916 0.12 -1.1
789,983 + GFF1916 0.12 -1.2
789,984 - GFF1916 0.12 -1.0
789,984 - GFF1916 0.12 -0.5
789,984 - GFF1916 0.12 -0.8
789,984 - GFF1916 0.12 -1.6
789,984 - GFF1916 0.12 -0.8
789,984 - GFF1916 0.12 -0.8
789,984 - GFF1916 0.12 -0.8
789,984 - GFF1916 0.12 +0.3
789,984 - GFF1916 0.12 -0.6
789,984 - GFF1916 0.12 +0.5
789,984 - GFF1916 0.12 -0.9
789,984 - GFF1916 0.12 -0.3
789,984 - GFF1916 0.12 -0.3
789,984 - GFF1916 0.12 -1.2
790,115 + GFF1916 0.22 -1.0
790,115 + GFF1916 0.22 -1.0
790,115 + GFF1916 0.22 -1.6
790,115 + GFF1916 0.22 -0.8
790,115 + GFF1916 0.22 -1.6
790,116 - GFF1916 0.22 -0.7
790,116 - GFF1916 0.22 -0.8
790,116 - GFF1916 0.22 -1.8
790,116 - GFF1916 0.22 -0.8
790,116 - GFF1916 0.22 -1.3
790,116 - GFF1916 0.22 -0.1
790,116 - GFF1916 0.22 -0.5
790,145 + GFF1916 0.25 -0.4
790,145 + GFF1916 0.25 -0.8
790,146 - GFF1916 0.25 -0.5
790,160 + GFF1916 0.26 -1.0
790,160 + GFF1916 0.26 -1.3
790,160 + GFF1916 0.26 +0.1
790,160 + GFF1916 0.26 -0.7
790,161 - GFF1916 0.26 -1.8
790,161 - GFF1916 0.26 -1.3
790,161 - GFF1916 0.26 +0.0
790,161 - GFF1916 0.26 +0.6
790,161 - GFF1916 0.26 +0.7
790,367 + GFF1916 0.42 -0.6
790,367 + GFF1916 0.42 -0.1
790,367 + GFF1916 0.42 -0.8
790,367 + GFF1916 0.42 -1.1
790,367 + GFF1916 0.42 -1.1
790,367 + GFF1916 0.42 -0.2
790,368 - GFF1916 0.42 -0.7
790,368 - GFF1916 0.42 -0.9
790,368 - GFF1916 0.42 -0.9
790,368 - GFF1916 0.42 -1.4
790,368 - GFF1916 0.42 -0.9
790,368 - GFF1916 0.42 +0.2
790,368 - GFF1916 0.42 -1.5
790,368 - GFF1916 0.42 -1.2
790,556 + GFF1916 0.57 -1.2
790,557 - GFF1916 0.57 -0.4
790,557 - GFF1916 0.57 -0.7
790,557 - GFF1916 0.57 -0.7
790,592 + GFF1916 0.60 -0.1

Or see this region's nucleotide sequence