Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1907 and GFF1908 are separated by 2 nucleotides GFF1908 and GFF1909 are separated by 34 nucleotides GFF1909 and GFF1910 overlap by 20 nucleotides
GFF1907 - membrane protein, putative, at 781,574 to 782,695
GFF1907
GFF1908 - hypothetical protein, at 782,698 to 782,916
GFF1908
GFF1909 - Integral membrane protein, at 782,951 to 783,559
GFF1909
GFF1910 - Cys regulon transcriptional activator CysB, at 783,540 to 784,427
GFF1910
Position (kb) 782
783 Strain fitness (log2 ratio) -1
0
1
2 at 781.844 kb on + strand, within GFF1907 at 781.844 kb on + strand, within GFF1907 at 781.844 kb on + strand, within GFF1907 at 781.845 kb on - strand, within GFF1907 at 782.078 kb on + strand, within GFF1907 at 782.078 kb on + strand, within GFF1907 at 782.078 kb on + strand, within GFF1907 at 782.078 kb on + strand, within GFF1907 at 782.079 kb on - strand, within GFF1907 at 782.079 kb on - strand, within GFF1907 at 782.079 kb on - strand, within GFF1907 at 782.401 kb on - strand, within GFF1907 at 782.414 kb on + strand, within GFF1907 at 782.492 kb on + strand, within GFF1907 at 783.050 kb on + strand, within GFF1909 at 783.060 kb on - strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.203 kb on + strand, within GFF1909 at 783.204 kb on - strand, within GFF1909 at 783.204 kb on - strand, within GFF1909 at 783.204 kb on - strand, within GFF1909 at 783.204 kb on - strand, within GFF1909 at 783.273 kb on - strand, within GFF1909 at 783.273 kb on - strand, within GFF1909 at 783.374 kb on + strand, within GFF1909 at 783.383 kb on + strand, within GFF1909 at 783.383 kb on + strand, within GFF1909 at 783.416 kb on + strand, within GFF1909 at 783.417 kb on - strand, within GFF1909 at 783.417 kb on - strand, within GFF1909 at 783.417 kb on - strand, within GFF1909 at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.610 kb on + strand at 783.611 kb on - strand at 783.611 kb on - strand at 783.611 kb on - strand at 783.611 kb on - strand at 783.611 kb on - strand at 783.611 kb on - strand at 783.658 kb on + strand, within GFF1910 at 783.658 kb on + strand, within GFF1910 at 783.659 kb on - strand, within GFF1910 at 783.659 kb on - strand, within GFF1910 at 783.907 kb on + strand, within GFF1910 at 783.908 kb on - strand, within GFF1910
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 781,844 + GFF1907 0.24 +1.9 781,844 + GFF1907 0.24 -0.2 781,844 + GFF1907 0.24 -0.3 781,845 - GFF1907 0.24 -0.3 782,078 + GFF1907 0.45 -0.2 782,078 + GFF1907 0.45 -1.5 782,078 + GFF1907 0.45 +0.1 782,078 + GFF1907 0.45 -0.3 782,079 - GFF1907 0.45 -0.3 782,079 - GFF1907 0.45 +0.1 782,079 - GFF1907 0.45 -0.4 782,401 - GFF1907 0.74 -0.6 782,414 + GFF1907 0.75 -1.4 782,492 + GFF1907 0.82 +0.2 783,050 + GFF1909 0.16 -0.0 783,060 - GFF1909 0.18 -0.1 783,203 + GFF1909 0.41 +0.6 783,203 + GFF1909 0.41 -0.1 783,203 + GFF1909 0.41 -0.9 783,203 + GFF1909 0.41 -1.3 783,203 + GFF1909 0.41 -0.2 783,203 + GFF1909 0.41 -0.2 783,204 - GFF1909 0.42 +0.2 783,204 - GFF1909 0.42 +1.2 783,204 - GFF1909 0.42 -0.1 783,204 - GFF1909 0.42 +0.9 783,273 - GFF1909 0.53 +0.9 783,273 - GFF1909 0.53 -1.0 783,374 + GFF1909 0.69 -0.3 783,383 + GFF1909 0.71 -1.7 783,383 + GFF1909 0.71 -1.5 783,416 + GFF1909 0.76 +1.1 783,417 - GFF1909 0.77 -1.2 783,417 - GFF1909 0.77 +0.2 783,417 - GFF1909 0.77 +0.8 783,610 + +0.2 783,610 + +0.2 783,610 + +0.1 783,610 + -0.1 783,610 + +0.3 783,610 + +0.4 783,610 + -0.1 783,610 + +0.2 783,610 + +0.3 783,610 + +0.3 783,610 + -0.0 783,610 + +0.4 783,610 + -0.1 783,611 - -0.2 783,611 - +0.9 783,611 - +0.1 783,611 - +0.7 783,611 - -0.1 783,611 - +0.0 783,658 + GFF1910 0.13 -0.3 783,658 + GFF1910 0.13 -0.2 783,659 - GFF1910 0.13 -0.6 783,659 - GFF1910 0.13 +0.2 783,907 + GFF1910 0.41 -1.1 783,908 - GFF1910 0.41 -0.4
Or see this region's nucleotide sequence