Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1873 and GFF1874 are separated by 238 nucleotides GFF1874 and GFF1875 are separated by 7 nucleotides GFF1875 and GFF1876 are separated by 22 nucleotides
GFF1873 - Transcriptional regulator, at 737,329 to 738,240
GFF1873
GFF1874 - Mannose-6-phosphate isomerase, at 738,479 to 739,042
GFF1874
GFF1875 - hydrolase, alpha/beta fold family, at 739,050 to 739,829
GFF1875
GFF1876 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 739,852 to 740,904
GFF1876
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 737.618 kb on + strand, within GFF1873 at 737.618 kb on + strand, within GFF1873 at 737.618 kb on + strand, within GFF1873 at 737.619 kb on - strand, within GFF1873 at 737.619 kb on - strand, within GFF1873 at 737.783 kb on + strand, within GFF1873 at 737.783 kb on + strand, within GFF1873 at 737.924 kb on + strand, within GFF1873 at 737.924 kb on + strand, within GFF1873 at 737.925 kb on - strand, within GFF1873 at 737.925 kb on - strand, within GFF1873 at 738.034 kb on - strand, within GFF1873 at 738.322 kb on - strand at 738.362 kb on - strand at 738.608 kb on + strand, within GFF1874 at 738.608 kb on + strand, within GFF1874 at 738.609 kb on - strand, within GFF1874 at 738.609 kb on - strand, within GFF1874 at 738.610 kb on - strand, within GFF1874 at 739.016 kb on + strand at 739.017 kb on - strand at 739.083 kb on + strand at 739.083 kb on + strand at 739.083 kb on + strand at 739.084 kb on - strand at 739.084 kb on - strand at 739.084 kb on - strand at 739.249 kb on - strand, within GFF1875 at 739.368 kb on + strand, within GFF1875 at 739.368 kb on + strand, within GFF1875 at 739.368 kb on + strand, within GFF1875 at 739.369 kb on - strand, within GFF1875 at 739.618 kb on + strand, within GFF1875 at 739.618 kb on + strand, within GFF1875 at 739.731 kb on + strand, within GFF1875 at 739.963 kb on + strand, within GFF1876 at 739.963 kb on + strand, within GFF1876 at 739.963 kb on + strand, within GFF1876 at 739.963 kb on + strand, within GFF1876 at 739.964 kb on - strand, within GFF1876 at 739.964 kb on - strand, within GFF1876 at 739.964 kb on - strand, within GFF1876 at 739.964 kb on - strand, within GFF1876 at 739.964 kb on - strand, within GFF1876 at 739.975 kb on + strand, within GFF1876 at 739.975 kb on + strand, within GFF1876 at 739.976 kb on - strand, within GFF1876 at 739.984 kb on + strand, within GFF1876 at 739.985 kb on - strand, within GFF1876 at 739.985 kb on - strand, within GFF1876
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 737,618 + GFF1873 0.32 +1.3 737,618 + GFF1873 0.32 -0.2 737,618 + GFF1873 0.32 +0.4 737,619 - GFF1873 0.32 -0.3 737,619 - GFF1873 0.32 +0.5 737,783 + GFF1873 0.50 -0.5 737,783 + GFF1873 0.50 +0.3 737,924 + GFF1873 0.65 -0.2 737,924 + GFF1873 0.65 -0.7 737,925 - GFF1873 0.65 -0.2 737,925 - GFF1873 0.65 -0.7 738,034 - GFF1873 0.77 +0.2 738,322 - +0.2 738,362 - +0.0 738,608 + GFF1874 0.23 +0.5 738,608 + GFF1874 0.23 +1.0 738,609 - GFF1874 0.23 -1.8 738,609 - GFF1874 0.23 +0.2 738,610 - GFF1874 0.23 +0.6 739,016 + +0.8 739,017 - -0.2 739,083 + -0.7 739,083 + -0.2 739,083 + -1.8 739,084 - -0.1 739,084 - -0.5 739,084 - +0.4 739,249 - GFF1875 0.26 +0.9 739,368 + GFF1875 0.41 -0.6 739,368 + GFF1875 0.41 -2.3 739,368 + GFF1875 0.41 +0.8 739,369 - GFF1875 0.41 -0.3 739,618 + GFF1875 0.73 +0.7 739,618 + GFF1875 0.73 -1.1 739,731 + GFF1875 0.87 +0.8 739,963 + GFF1876 0.11 -0.0 739,963 + GFF1876 0.11 +1.2 739,963 + GFF1876 0.11 +0.7 739,963 + GFF1876 0.11 -0.1 739,964 - GFF1876 0.11 -0.5 739,964 - GFF1876 0.11 -1.7 739,964 - GFF1876 0.11 +0.4 739,964 - GFF1876 0.11 -0.5 739,964 - GFF1876 0.11 -0.1 739,975 + GFF1876 0.12 +0.2 739,975 + GFF1876 0.12 -0.3 739,976 - GFF1876 0.12 -2.9 739,984 + GFF1876 0.13 +0.9 739,985 - GFF1876 0.13 -0.5 739,985 - GFF1876 0.13 +1.1
Or see this region's nucleotide sequence