Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF182 and GFF183 are separated by 23 nucleotides GFF183 and GFF184 are separated by 4 nucleotides GFF184 and GFF185 overlap by 4 nucleotides
GFF182 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 195,040 to 196,035
GFF182
GFF183 - Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1), at 196,059 to 196,973
GFF183
GFF184 - Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1), at 196,978 to 197,931
GFF184
GFF185 - Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1), at 197,928 to 198,857
GFF185
Position (kb) 196
197 Strain fitness (log2 ratio) -2
-1
0
1 at 195.521 kb on - strand, within GFF182 at 195.754 kb on + strand, within GFF182 at 195.755 kb on - strand, within GFF182 at 195.817 kb on + strand, within GFF182 at 196.031 kb on + strand at 196.031 kb on + strand at 196.031 kb on + strand at 196.031 kb on + strand at 196.031 kb on + strand at 196.032 kb on - strand at 196.032 kb on - strand at 196.972 kb on - strand at 196.972 kb on - strand at 196.987 kb on + strand at 196.988 kb on - strand at 196.988 kb on - strand at 196.988 kb on - strand at 196.988 kb on - strand at 196.994 kb on + strand at 196.995 kb on - strand at 197.047 kb on + strand at 197.047 kb on + strand at 197.048 kb on - strand at 197.048 kb on - strand at 197.572 kb on + strand, within GFF184 at 197.572 kb on + strand, within GFF184 at 197.573 kb on - strand, within GFF184
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 195,521 - GFF182 0.48 +0.5 195,754 + GFF182 0.72 +0.2 195,755 - GFF182 0.72 -0.1 195,817 + GFF182 0.78 +0.0 196,031 + -0.3 196,031 + -1.1 196,031 + -0.2 196,031 + +0.0 196,031 + +0.5 196,032 - -1.9 196,032 - -0.4 196,972 - -0.4 196,972 - -0.4 196,987 + -0.3 196,988 - +0.3 196,988 - +0.3 196,988 - +1.3 196,988 - +1.1 196,994 + -0.1 196,995 - +0.4 197,047 + -2.3 197,047 + -0.3 197,048 - +0.2 197,048 - -0.2 197,572 + GFF184 0.62 +0.3 197,572 + GFF184 0.62 +0.6 197,573 - GFF184 0.62 -1.7
Or see this region's nucleotide sequence