Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1817 and GFF1818 are separated by 87 nucleotides GFF1818 and GFF1819 are separated by 1 nucleotides GFF1819 and GFF1820 are separated by 38 nucleotides GFF1820 and GFF1821 overlap by 12 nucleotides
GFF1817 - 2-hydroxychromene-2-carboxylate isomerase, at 684,249 to 684,848
GFF1817
GFF1818 - Short chain dehydrogenase, at 684,936 to 685,694
GFF1818
GFF1819 - MaoC-like dehydratase, at 685,696 to 686,181
GFF1819
GFF1820 - Multiple antibiotic resistance protein marC, at 686,220 to 686,840
GFF1820
GFF1821 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 686,829 to 687,836
GFF1821
Position (kb) 685
686
687 Strain fitness (log2 ratio) -2
-1
0
1
2 at 684.800 kb on - strand at 684.826 kb on + strand at 684.826 kb on + strand at 684.826 kb on + strand at 684.826 kb on + strand at 684.826 kb on + strand at 684.826 kb on + strand at 684.827 kb on - strand at 684.827 kb on - strand at 684.827 kb on - strand at 684.830 kb on - strand at 684.870 kb on + strand at 684.870 kb on + strand at 684.870 kb on + strand at 684.870 kb on + strand at 684.871 kb on - strand at 684.901 kb on + strand at 684.901 kb on + strand at 684.901 kb on + strand at 684.902 kb on - strand at 684.935 kb on + strand at 684.936 kb on - strand at 685.044 kb on + strand, within GFF1818 at 685.044 kb on + strand, within GFF1818 at 685.044 kb on + strand, within GFF1818 at 685.044 kb on + strand, within GFF1818 at 685.045 kb on - strand, within GFF1818 at 685.045 kb on - strand, within GFF1818 at 685.045 kb on - strand, within GFF1818 at 685.416 kb on + strand, within GFF1818 at 685.417 kb on - strand, within GFF1818 at 685.417 kb on - strand, within GFF1818 at 685.653 kb on + strand at 685.653 kb on + strand at 685.653 kb on + strand at 685.654 kb on - strand at 685.732 kb on + strand at 685.732 kb on + strand at 685.733 kb on - strand at 686.144 kb on - strand at 686.179 kb on + strand at 686.179 kb on + strand at 686.292 kb on + strand, within GFF1820 at 686.292 kb on + strand, within GFF1820 at 686.292 kb on + strand, within GFF1820 at 686.610 kb on + strand, within GFF1820 at 686.610 kb on + strand, within GFF1820 at 686.658 kb on + strand, within GFF1820 at 686.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 684,800 - -0.7 684,826 + +1.0 684,826 + +1.8 684,826 + -2.2 684,826 + +0.5 684,826 + -1.7 684,826 + +1.0 684,827 - -1.7 684,827 - -2.1 684,827 - -0.7 684,830 - -1.2 684,870 + -0.8 684,870 + -0.6 684,870 + -0.1 684,870 + -0.4 684,871 - -0.2 684,901 + +0.1 684,901 + +0.0 684,901 + -0.3 684,902 - +0.2 684,935 + +0.6 684,936 - -0.1 685,044 + GFF1818 0.14 -0.2 685,044 + GFF1818 0.14 +0.9 685,044 + GFF1818 0.14 +0.1 685,044 + GFF1818 0.14 -1.2 685,045 - GFF1818 0.14 -0.7 685,045 - GFF1818 0.14 +0.2 685,045 - GFF1818 0.14 +0.1 685,416 + GFF1818 0.63 -0.2 685,417 - GFF1818 0.63 -0.1 685,417 - GFF1818 0.63 +0.4 685,653 + -0.4 685,653 + +1.0 685,653 + -0.1 685,654 - +0.4 685,732 + -0.4 685,732 + +0.2 685,733 - +0.7 686,144 - -0.7 686,179 + +0.1 686,179 + +1.0 686,292 + GFF1820 0.12 +0.3 686,292 + GFF1820 0.12 +0.1 686,292 + GFF1820 0.12 -2.2 686,610 + GFF1820 0.63 -0.1 686,610 + GFF1820 0.63 +1.1 686,658 + GFF1820 0.71 +0.8 686,845 + -0.1
Or see this region's nucleotide sequence