Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1816 and GFF1817 are separated by 29 nucleotides GFF1817 and GFF1818 are separated by 87 nucleotides GFF1818 and GFF1819 are separated by 1 nucleotides GFF1819 and GFF1820 are separated by 38 nucleotides
GFF1816 - Dienelactone hydrolase family, at 683,536 to 684,219
GFF1816
GFF1817 - 2-hydroxychromene-2-carboxylate isomerase, at 684,249 to 684,848
GFF1817
GFF1818 - Short chain dehydrogenase, at 684,936 to 685,694
GFF1818
GFF1819 - MaoC-like dehydratase, at 685,696 to 686,181
GFF1819
GFF1820 - Multiple antibiotic resistance protein marC, at 686,220 to 686,840
GFF1820
Position (kb) 684
685
686 Strain fitness (log2 ratio) -2
-1
0
1
2 at 684.000 kb on - strand, within GFF1816 at 684.056 kb on + strand, within GFF1816 at 684.167 kb on + strand at 684.167 kb on + strand at 684.168 kb on - strand at 684.319 kb on + strand, within GFF1817 at 684.319 kb on + strand, within GFF1817 at 684.319 kb on + strand, within GFF1817 at 684.319 kb on + strand, within GFF1817 at 684.320 kb on - strand, within GFF1817 at 684.320 kb on - strand, within GFF1817 at 684.320 kb on - strand, within GFF1817 at 684.374 kb on - strand, within GFF1817 at 684.800 kb on - strand at 684.826 kb on + strand at 684.826 kb on + strand at 684.826 kb on + strand at 684.826 kb on + strand at 684.826 kb on + strand at 684.826 kb on + strand at 684.827 kb on - strand at 684.827 kb on - strand at 684.827 kb on - strand at 684.830 kb on - strand at 684.870 kb on + strand at 684.870 kb on + strand at 684.870 kb on + strand at 684.870 kb on + strand at 684.871 kb on - strand at 684.901 kb on + strand at 684.901 kb on + strand at 684.901 kb on + strand at 684.902 kb on - strand at 684.935 kb on + strand at 684.936 kb on - strand at 685.044 kb on + strand, within GFF1818 at 685.044 kb on + strand, within GFF1818 at 685.044 kb on + strand, within GFF1818 at 685.044 kb on + strand, within GFF1818 at 685.045 kb on - strand, within GFF1818 at 685.045 kb on - strand, within GFF1818 at 685.045 kb on - strand, within GFF1818 at 685.416 kb on + strand, within GFF1818 at 685.417 kb on - strand, within GFF1818 at 685.417 kb on - strand, within GFF1818 at 685.653 kb on + strand at 685.653 kb on + strand at 685.653 kb on + strand at 685.654 kb on - strand at 685.732 kb on + strand at 685.732 kb on + strand at 685.733 kb on - strand at 686.144 kb on - strand at 686.179 kb on + strand at 686.179 kb on + strand at 686.292 kb on + strand, within GFF1820 at 686.292 kb on + strand, within GFF1820 at 686.292 kb on + strand, within GFF1820 at 686.610 kb on + strand, within GFF1820 at 686.610 kb on + strand, within GFF1820 at 686.658 kb on + strand, within GFF1820
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 684,000 - GFF1816 0.68 +0.2 684,056 + GFF1816 0.76 -0.4 684,167 + -0.8 684,167 + -1.1 684,168 - +1.0 684,319 + GFF1817 0.12 +1.9 684,319 + GFF1817 0.12 +0.6 684,319 + GFF1817 0.12 +0.3 684,319 + GFF1817 0.12 +1.0 684,320 - GFF1817 0.12 -0.4 684,320 - GFF1817 0.12 +0.1 684,320 - GFF1817 0.12 +0.1 684,374 - GFF1817 0.21 +0.7 684,800 - -0.7 684,826 + +1.0 684,826 + +1.8 684,826 + -2.2 684,826 + +0.5 684,826 + -1.7 684,826 + +1.0 684,827 - -1.7 684,827 - -2.1 684,827 - -0.7 684,830 - -1.2 684,870 + -0.8 684,870 + -0.6 684,870 + -0.1 684,870 + -0.4 684,871 - -0.2 684,901 + +0.1 684,901 + +0.0 684,901 + -0.3 684,902 - +0.2 684,935 + +0.6 684,936 - -0.1 685,044 + GFF1818 0.14 -0.2 685,044 + GFF1818 0.14 +0.9 685,044 + GFF1818 0.14 +0.1 685,044 + GFF1818 0.14 -1.2 685,045 - GFF1818 0.14 -0.7 685,045 - GFF1818 0.14 +0.2 685,045 - GFF1818 0.14 +0.1 685,416 + GFF1818 0.63 -0.2 685,417 - GFF1818 0.63 -0.1 685,417 - GFF1818 0.63 +0.4 685,653 + -0.4 685,653 + +1.0 685,653 + -0.1 685,654 - +0.4 685,732 + -0.4 685,732 + +0.2 685,733 - +0.7 686,144 - -0.7 686,179 + +0.1 686,179 + +1.0 686,292 + GFF1820 0.12 +0.3 686,292 + GFF1820 0.12 +0.1 686,292 + GFF1820 0.12 -2.2 686,610 + GFF1820 0.63 -0.1 686,610 + GFF1820 0.63 +1.1 686,658 + GFF1820 0.71 +0.8
Or see this region's nucleotide sequence