Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1692 and GFF1693 are separated by 15 nucleotides GFF1693 and GFF1694 are separated by 109 nucleotides GFF1694 and GFF1695 are separated by 254 nucleotides
GFF1692 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 542,244 to 543,074
GFF1692
GFF1693 - RNA binding methyltransferase FtsJ like, at 543,090 to 543,842
GFF1693
GFF1694 - Adenosylhomocysteinase (EC 3.3.1.1), at 543,952 to 545,403
GFF1694
GFF1695 - haloacid dehalogenase-like hydrolase, at 545,658 to 546,464
GFF1695
Position (kb) 543
544
545
546 Strain fitness (log2 ratio) -2
-1
0
1 at 543.103 kb on + strand at 543.103 kb on + strand at 543.104 kb on - strand at 543.154 kb on + strand at 543.155 kb on - strand at 543.217 kb on + strand, within GFF1693 at 543.217 kb on + strand, within GFF1693 at 543.218 kb on - strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.658 kb on + strand, within GFF1693 at 543.956 kb on + strand at 543.956 kb on + strand at 543.957 kb on - strand at 543.962 kb on + strand at 543.963 kb on - strand at 543.963 kb on - strand at 545.570 kb on + strand at 545.571 kb on - strand at 545.943 kb on + strand, within GFF1695 at 545.943 kb on + strand, within GFF1695 at 545.944 kb on - strand, within GFF1695 at 545.944 kb on - strand, within GFF1695 at 545.944 kb on - strand, within GFF1695 at 546.160 kb on + strand, within GFF1695 at 546.161 kb on - strand, within GFF1695 at 546.161 kb on - strand, within GFF1695 at 546.161 kb on - strand, within GFF1695 at 546.161 kb on - strand, within GFF1695 at 546.161 kb on - strand, within GFF1695 at 546.277 kb on - strand, within GFF1695 at 546.384 kb on + strand at 546.384 kb on + strand at 546.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 543,103 + +0.3 543,103 + -0.6 543,104 - -0.1 543,154 + +0.7 543,155 - -0.7 543,217 + GFF1693 0.17 -0.1 543,217 + GFF1693 0.17 +1.5 543,218 - GFF1693 0.17 +0.0 543,658 + GFF1693 0.75 -0.3 543,658 + GFF1693 0.75 -1.1 543,658 + GFF1693 0.75 +0.3 543,658 + GFF1693 0.75 +1.2 543,658 + GFF1693 0.75 +0.5 543,658 + GFF1693 0.75 -0.1 543,956 + -1.8 543,956 + -0.6 543,957 - -0.4 543,962 + -2.3 543,963 - -0.8 543,963 - -1.1 545,570 + -1.7 545,571 - -0.3 545,943 + GFF1695 0.35 -0.1 545,943 + GFF1695 0.35 -0.2 545,944 - GFF1695 0.35 -0.4 545,944 - GFF1695 0.35 +0.2 545,944 - GFF1695 0.35 +0.1 546,160 + GFF1695 0.62 -0.4 546,161 - GFF1695 0.62 -0.1 546,161 - GFF1695 0.62 +1.3 546,161 - GFF1695 0.62 +1.7 546,161 - GFF1695 0.62 -0.8 546,161 - GFF1695 0.62 +0.2 546,277 - GFF1695 0.77 +0.1 546,384 + -1.1 546,384 + +1.2 546,385 - +0.3
Or see this region's nucleotide sequence