Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1600 and GFF1601 are separated by 88 nucleotides GFF1601 and GFF1602 are separated by 6 nucleotides GFF1602 and GFF1603 are separated by 33 nucleotides
GFF1600 - N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157), at 455,386 to 456,804
GFF1600
GFF1601 - lipoprotein, putative, at 456,893 to 457,717
GFF1601
GFF1602 - Arsenic efflux pump protein, at 457,724 to 459,004
GFF1602
GFF1603 - Cyanate transport protein CynX, at 459,038 to 460,222
GFF1603
Position (kb) 457
458
459
460 Strain fitness (log2 ratio) -2
-1
0
1 at 456.941 kb on + strand at 456.942 kb on - strand at 456.966 kb on - strand at 457.073 kb on + strand, within GFF1601 at 457.073 kb on + strand, within GFF1601 at 457.361 kb on + strand, within GFF1601 at 457.362 kb on - strand, within GFF1601 at 457.577 kb on + strand, within GFF1601 at 457.577 kb on + strand, within GFF1601 at 457.577 kb on - strand, within GFF1601 at 457.578 kb on - strand, within GFF1601 at 457.578 kb on - strand, within GFF1601 at 457.578 kb on - strand, within GFF1601 at 457.679 kb on + strand at 457.725 kb on + strand at 458.454 kb on + strand, within GFF1602 at 458.455 kb on - strand, within GFF1602 at 458.740 kb on - strand, within GFF1602 at 458.934 kb on + strand at 458.935 kb on - strand at 459.019 kb on - strand at 459.019 kb on - strand at 459.100 kb on - strand at 459.100 kb on - strand at 459.100 kb on - strand at 459.100 kb on - strand at 459.537 kb on + strand, within GFF1603 at 459.537 kb on + strand, within GFF1603 at 459.538 kb on - strand, within GFF1603 at 459.630 kb on + strand, within GFF1603 at 459.819 kb on + strand, within GFF1603 at 459.819 kb on + strand, within GFF1603
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 456,941 + +0.0 456,942 - +0.9 456,966 - +0.7 457,073 + GFF1601 0.22 +0.2 457,073 + GFF1601 0.22 +0.4 457,361 + GFF1601 0.57 +0.7 457,362 - GFF1601 0.57 -2.6 457,577 + GFF1601 0.83 +0.6 457,577 + GFF1601 0.83 -0.4 457,577 - GFF1601 0.83 -0.4 457,578 - GFF1601 0.83 -0.1 457,578 - GFF1601 0.83 -2.1 457,578 - GFF1601 0.83 -0.1 457,679 + +0.9 457,725 + +1.0 458,454 + GFF1602 0.57 +0.6 458,455 - GFF1602 0.57 +1.0 458,740 - GFF1602 0.79 -0.4 458,934 + -0.4 458,935 - +1.2 459,019 - -0.5 459,019 - -0.0 459,100 - -0.0 459,100 - +0.2 459,100 - +0.3 459,100 - -0.5 459,537 + GFF1603 0.42 -0.5 459,537 + GFF1603 0.42 +0.4 459,538 - GFF1603 0.42 -0.4 459,630 + GFF1603 0.50 -1.0 459,819 + GFF1603 0.66 -0.0 459,819 + GFF1603 0.66 +0.4
Or see this region's nucleotide sequence