Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF16

Experiment: Ying_all64 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF14 and GFF15 overlap by 4 nucleotidesGFF15 and GFF16 are separated by 42 nucleotidesGFF16 and GFF17 are separated by 1 nucleotides GFF14 - Aldehyde dehydrogenase (EC 1.2.1.3), at 10,658 to 11,764 GFF14 GFF15 - Aldehyde dehydrogenase (EC 1.2.1.3), at 11,761 to 11,874 GFF15 GFF16 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 11,917 to 12,696 GFF16 GFF17 - LysR family transcriptional regulator YfeR, at 12,698 to 13,600 GFF17 Position (kb) 11 12 13Strain fitness (log2 ratio) -1 0 1at 11.331 kb on - strand, within GFF14at 12.396 kb on + strand, within GFF16at 12.616 kb on + strand, within GFF16at 12.641 kb on - strandat 13.220 kb on + strand, within GFF17at 13.606 kb on - strandat 13.627 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
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11,331 - GFF14 0.61 +0.1
12,396 + GFF16 0.61 -1.3
12,616 + GFF16 0.90 -0.6
12,641 - +0.3
13,220 + GFF17 0.58 +0.2
13,606 - +0.3
13,627 - -0.1

Or see this region's nucleotide sequence