Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1539 and GFF1540 are separated by 4 nucleotides GFF1540 and GFF1541 are separated by 10 nucleotides GFF1541 and GFF1542 are separated by 1 nucleotides GFF1542 and GFF1543 overlap by 4 nucleotides
GFF1539 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 394,005 to 395,006
GFF1539
GFF1540 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 395,011 to 395,880
GFF1540
GFF1541 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 395,891 to 396,658
GFF1541
GFF1542 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 396,660 to 397,466
GFF1542
GFF1543 - Beta-lactamase-like, at 397,463 to 398,365
GFF1543
Position (kb) 395
396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 394.894 kb on + strand, within GFF1539 at 394.894 kb on + strand, within GFF1539 at 394.894 kb on + strand, within GFF1539 at 394.918 kb on + strand at 394.918 kb on + strand at 394.919 kb on - strand at 394.919 kb on - strand at 394.919 kb on - strand at 395.117 kb on + strand, within GFF1540 at 395.118 kb on - strand, within GFF1540 at 395.118 kb on - strand, within GFF1540 at 395.420 kb on + strand, within GFF1540 at 395.420 kb on + strand, within GFF1540 at 395.541 kb on - strand, within GFF1540 at 395.541 kb on - strand, within GFF1540 at 395.834 kb on + strand at 396.331 kb on - strand, within GFF1541 at 396.706 kb on + strand at 396.839 kb on - strand, within GFF1542 at 396.839 kb on - strand, within GFF1542 at 397.190 kb on - strand, within GFF1542
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 394,894 + GFF1539 0.89 -0.3 394,894 + GFF1539 0.89 +0.3 394,894 + GFF1539 0.89 -0.4 394,918 + +0.8 394,918 + +1.0 394,919 - -1.6 394,919 - +0.2 394,919 - -0.3 395,117 + GFF1540 0.12 -1.0 395,118 - GFF1540 0.12 -1.6 395,118 - GFF1540 0.12 -0.1 395,420 + GFF1540 0.47 +0.6 395,420 + GFF1540 0.47 -0.2 395,541 - GFF1540 0.61 +0.1 395,541 - GFF1540 0.61 +0.8 395,834 + +0.2 396,331 - GFF1541 0.57 +0.9 396,706 + -0.3 396,839 - GFF1542 0.22 -3.0 396,839 - GFF1542 0.22 +0.6 397,190 - GFF1542 0.66 +1.4
Or see this region's nucleotide sequence