Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1442

Experiment: Ying_all64 rep A; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1441 and GFF1442 overlap by 22 nucleotidesGFF1442 and GFF1443 are separated by 76 nucleotides GFF1441 - Flagellar hook-associated protein FliD, at 296,648 to 298,057 GFF1441 GFF1442 - hypothetical protein, at 298,036 to 298,188 GFF1442 GFF1443 - Flagellin protein FlaA, at 298,265 to 299,413 GFF1443 Position (kb) 298 299Strain fitness (log2 ratio) -1 0 1at 297.387 kb on - strand, within GFF1441at 297.387 kb on - strand, within GFF1441at 297.387 kb on - strand, within GFF1441at 297.509 kb on + strand, within GFF1441at 297.509 kb on + strand, within GFF1441at 297.510 kb on - strand, within GFF1441at 297.510 kb on - strand, within GFF1441at 297.965 kb on + strandat 297.965 kb on + strandat 297.965 kb on + strandat 297.966 kb on - strandat 298.187 kb on - strandat 298.187 kb on - strandat 298.973 kb on + strand, within GFF1443

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
remove
297,387 - GFF1441 0.52 +0.1
297,387 - GFF1441 0.52 +1.1
297,387 - GFF1441 0.52 -0.4
297,509 + GFF1441 0.61 -0.5
297,509 + GFF1441 0.61 -1.4
297,510 - GFF1441 0.61 -0.1
297,510 - GFF1441 0.61 -0.3
297,965 + -0.6
297,965 + +0.7
297,965 + +0.4
297,966 - -0.3
298,187 - -0.1
298,187 - +0.4
298,973 + GFF1443 0.62 -0.2

Or see this region's nucleotide sequence