Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1390 and GFF1391 are separated by 10 nucleotides GFF1391 and GFF1392 are separated by 4 nucleotides
GFF1390 - General secretion pathway protein D, at 243,900 to 246,104
GFF1390
GFF1391 - General secretion pathway protein E, at 246,115 to 247,557
GFF1391
GFF1392 - General secretion pathway protein F / Type II secretory pathway, component PulF, at 247,562 to 248,791
GFF1392
Position (kb) 246
247
248 Strain fitness (log2 ratio) -2
-1
0
1
2 at 245.328 kb on + strand, within GFF1390 at 245.329 kb on - strand, within GFF1390 at 245.329 kb on - strand, within GFF1390 at 245.329 kb on - strand, within GFF1390 at 245.329 kb on - strand, within GFF1390 at 245.329 kb on - strand, within GFF1390 at 245.598 kb on + strand, within GFF1390 at 245.598 kb on + strand, within GFF1390 at 245.598 kb on + strand, within GFF1390 at 245.599 kb on - strand, within GFF1390 at 245.599 kb on - strand, within GFF1390 at 245.736 kb on + strand, within GFF1390 at 245.737 kb on - strand, within GFF1390 at 245.737 kb on - strand, within GFF1390 at 245.901 kb on + strand at 246.121 kb on + strand at 246.122 kb on - strand at 246.133 kb on + strand at 246.133 kb on + strand at 246.133 kb on + strand at 246.334 kb on + strand, within GFF1391 at 246.335 kb on - strand, within GFF1391 at 246.532 kb on + strand, within GFF1391 at 247.357 kb on + strand, within GFF1391 at 247.357 kb on + strand, within GFF1391 at 247.358 kb on - strand, within GFF1391 at 247.378 kb on + strand, within GFF1391 at 247.378 kb on + strand, within GFF1391 at 247.379 kb on - strand, within GFF1391 at 247.379 kb on - strand, within GFF1391 at 247.379 kb on - strand, within GFF1391 at 247.379 kb on - strand, within GFF1391 at 247.448 kb on - strand at 247.448 kb on - strand at 247.571 kb on + strand at 247.572 kb on - strand at 247.572 kb on - strand at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.970 kb on + strand, within GFF1392 at 247.971 kb on - strand, within GFF1392 at 247.971 kb on - strand, within GFF1392 at 248.091 kb on - strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.144 kb on + strand, within GFF1392 at 248.145 kb on - strand, within GFF1392 at 248.145 kb on - strand, within GFF1392 at 248.145 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.244 kb on - strand, within GFF1392 at 248.378 kb on + strand, within GFF1392 at 248.379 kb on - strand, within GFF1392
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 245,328 + GFF1390 0.65 -0.3 245,329 - GFF1390 0.65 +0.2 245,329 - GFF1390 0.65 +1.1 245,329 - GFF1390 0.65 +0.2 245,329 - GFF1390 0.65 -0.6 245,329 - GFF1390 0.65 +1.1 245,598 + GFF1390 0.77 +0.4 245,598 + GFF1390 0.77 +0.8 245,598 + GFF1390 0.77 -0.1 245,599 - GFF1390 0.77 +0.4 245,599 - GFF1390 0.77 +0.7 245,736 + GFF1390 0.83 +2.0 245,737 - GFF1390 0.83 -1.4 245,737 - GFF1390 0.83 -0.7 245,901 + +0.9 246,121 + +0.4 246,122 - -0.3 246,133 + -0.0 246,133 + -0.4 246,133 + -0.1 246,334 + GFF1391 0.15 -0.3 246,335 - GFF1391 0.15 +1.5 246,532 + GFF1391 0.29 +0.3 247,357 + GFF1391 0.86 +0.1 247,357 + GFF1391 0.86 +1.2 247,358 - GFF1391 0.86 +0.7 247,378 + GFF1391 0.88 -0.0 247,378 + GFF1391 0.88 +0.9 247,379 - GFF1391 0.88 -0.2 247,379 - GFF1391 0.88 +0.1 247,379 - GFF1391 0.88 -0.3 247,379 - GFF1391 0.88 +1.4 247,448 - -0.1 247,448 - +0.3 247,571 + -0.1 247,572 - -1.0 247,572 - -0.2 247,970 + GFF1392 0.33 -1.6 247,970 + GFF1392 0.33 +0.1 247,970 + GFF1392 0.33 +0.0 247,970 + GFF1392 0.33 +0.1 247,970 + GFF1392 0.33 -0.0 247,971 - GFF1392 0.33 +0.4 247,971 - GFF1392 0.33 -0.4 248,091 - GFF1392 0.43 +0.0 248,144 + GFF1392 0.47 +0.4 248,144 + GFF1392 0.47 +0.1 248,144 + GFF1392 0.47 +0.2 248,144 + GFF1392 0.47 +0.1 248,144 + GFF1392 0.47 -0.1 248,145 - GFF1392 0.47 +0.7 248,145 - GFF1392 0.47 +0.3 248,145 - GFF1392 0.47 +0.1 248,244 - GFF1392 0.55 -0.1 248,244 - GFF1392 0.55 +1.0 248,244 - GFF1392 0.55 -1.9 248,244 - GFF1392 0.55 +0.3 248,378 + GFF1392 0.66 -0.1 248,379 - GFF1392 0.66 -0.0
Or see this region's nucleotide sequence