Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1330

Experiment: Ying_all64 rep A; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1329 and GFF1330 are separated by 74 nucleotidesGFF1330 and GFF1331 are separated by 20 nucleotides GFF1329 - FIG00761799: membrane protein, at 181,391 to 182,518 GFF1329 GFF1330 - Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), at 182,593 to 183,762 GFF1330 GFF1331 - 3-dehydroquinate synthase (EC 4.2.3.4), at 183,783 to 184,904 GFF1331 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1at 181.671 kb on + strand, within GFF1329at 181.671 kb on + strand, within GFF1329at 181.671 kb on + strand, within GFF1329at 181.671 kb on + strand, within GFF1329at 181.671 kb on + strand, within GFF1329at 181.672 kb on - strand, within GFF1329at 181.734 kb on + strand, within GFF1329at 181.734 kb on + strand, within GFF1329at 181.734 kb on + strand, within GFF1329at 181.735 kb on - strand, within GFF1329at 181.872 kb on + strand, within GFF1329at 181.873 kb on + strand, within GFF1329at 181.873 kb on - strand, within GFF1329at 181.873 kb on - strand, within GFF1329at 181.873 kb on - strand, within GFF1329at 181.873 kb on - strand, within GFF1329at 181.918 kb on - strand, within GFF1329at 182.152 kb on + strand, within GFF1329at 182.153 kb on - strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.166 kb on + strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.167 kb on - strand, within GFF1329at 182.533 kb on + strandat 182.616 kb on - strandat 182.666 kb on + strandat 182.666 kb on + strandat 182.667 kb on - strandat 182.738 kb on + strand, within GFF1330at 182.738 kb on + strand, within GFF1330at 182.738 kb on + strand, within GFF1330at 182.738 kb on + strand, within GFF1330at 182.739 kb on - strand, within GFF1330at 182.957 kb on + strand, within GFF1330at 182.957 kb on + strand, within GFF1330at 182.958 kb on - strand, within GFF1330at 182.958 kb on - strand, within GFF1330at 182.958 kb on - strand, within GFF1330at 182.958 kb on - strand, within GFF1330at 182.958 kb on - strand, within GFF1330at 182.958 kb on - strand, within GFF1330at 182.958 kb on - strand, within GFF1330at 182.958 kb on - strand, within GFF1330at 183.047 kb on + strand, within GFF1330at 183.131 kb on + strand, within GFF1330at 183.132 kb on - strand, within GFF1330at 183.132 kb on - strand, within GFF1330at 183.617 kb on + strand, within GFF1330at 183.617 kb on + strand, within GFF1330at 183.618 kb on - strand, within GFF1330at 183.618 kb on - strand, within GFF1330at 183.926 kb on - strand, within GFF1331at 184.102 kb on + strand, within GFF1331at 184.315 kb on + strand, within GFF1331at 184.316 kb on - strand, within GFF1331at 184.405 kb on + strand, within GFF1331at 184.405 kb on + strand, within GFF1331at 184.406 kb on - strand, within GFF1331at 184.406 kb on - strand, within GFF1331at 184.406 kb on - strand, within GFF1331at 184.406 kb on - strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.525 kb on + strand, within GFF1331at 184.526 kb on - strand, within GFF1331at 184.526 kb on - strand, within GFF1331at 184.526 kb on - strand, within GFF1331at 184.654 kb on + strand, within GFF1331at 184.654 kb on + strand, within GFF1331at 184.655 kb on - strand, within GFF1331at 184.655 kb on - strand, within GFF1331at 184.655 kb on - strand, within GFF1331at 184.696 kb on + strand, within GFF1331at 184.697 kb on - strand, within GFF1331at 184.697 kb on - strand, within GFF1331at 184.697 kb on - strand, within GFF1331at 184.732 kb on + strand, within GFF1331

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1
remove
181,671 + GFF1329 0.25 -0.9
181,671 + GFF1329 0.25 -0.3
181,671 + GFF1329 0.25 -0.7
181,671 + GFF1329 0.25 +0.1
181,671 + GFF1329 0.25 -3.0
181,672 - GFF1329 0.25 +0.0
181,734 + GFF1329 0.30 -0.1
181,734 + GFF1329 0.30 -0.6
181,734 + GFF1329 0.30 -0.9
181,735 - GFF1329 0.30 -0.8
181,872 + GFF1329 0.43 -0.1
181,873 + GFF1329 0.43 +0.6
181,873 - GFF1329 0.43 +1.4
181,873 - GFF1329 0.43 -1.5
181,873 - GFF1329 0.43 +0.3
181,873 - GFF1329 0.43 +1.0
181,918 - GFF1329 0.47 -0.3
182,152 + GFF1329 0.67 -0.3
182,153 - GFF1329 0.68 -0.4
182,166 + GFF1329 0.69 +1.1
182,166 + GFF1329 0.69 +0.4
182,166 + GFF1329 0.69 -0.2
182,166 + GFF1329 0.69 +0.3
182,166 + GFF1329 0.69 +0.0
182,166 + GFF1329 0.69 +0.2
182,166 + GFF1329 0.69 +0.2
182,166 + GFF1329 0.69 -1.6
182,167 - GFF1329 0.69 +0.5
182,167 - GFF1329 0.69 -1.0
182,167 - GFF1329 0.69 +0.1
182,167 - GFF1329 0.69 -0.4
182,167 - GFF1329 0.69 +0.0
182,167 - GFF1329 0.69 +0.4
182,167 - GFF1329 0.69 -0.6
182,167 - GFF1329 0.69 +0.7
182,533 + -0.4
182,616 - +1.4
182,666 + +0.5
182,666 + +0.5
182,667 - -0.2
182,738 + GFF1330 0.12 -0.4
182,738 + GFF1330 0.12 +1.7
182,738 + GFF1330 0.12 -1.1
182,738 + GFF1330 0.12 +0.4
182,739 - GFF1330 0.12 +0.4
182,957 + GFF1330 0.31 -0.3
182,957 + GFF1330 0.31 -0.1
182,958 - GFF1330 0.31 -1.5
182,958 - GFF1330 0.31 -0.1
182,958 - GFF1330 0.31 -0.0
182,958 - GFF1330 0.31 +0.5
182,958 - GFF1330 0.31 +0.2
182,958 - GFF1330 0.31 +0.2
182,958 - GFF1330 0.31 +1.0
182,958 - GFF1330 0.31 +0.9
183,047 + GFF1330 0.39 -0.4
183,131 + GFF1330 0.46 -0.0
183,132 - GFF1330 0.46 -0.5
183,132 - GFF1330 0.46 +0.2
183,617 + GFF1330 0.88 +0.1
183,617 + GFF1330 0.88 +0.3
183,618 - GFF1330 0.88 +1.1
183,618 - GFF1330 0.88 +0.4
183,926 - GFF1331 0.13 +0.7
184,102 + GFF1331 0.28 -0.7
184,315 + GFF1331 0.47 -0.6
184,316 - GFF1331 0.48 -0.4
184,405 + GFF1331 0.55 +0.4
184,405 + GFF1331 0.55 -3.0
184,406 - GFF1331 0.56 +0.1
184,406 - GFF1331 0.56 -1.4
184,406 - GFF1331 0.56 -0.2
184,406 - GFF1331 0.56 -2.1
184,525 + GFF1331 0.66 -1.3
184,525 + GFF1331 0.66 -0.2
184,525 + GFF1331 0.66 -2.1
184,525 + GFF1331 0.66 -1.1
184,525 + GFF1331 0.66 -1.4
184,525 + GFF1331 0.66 -0.5
184,526 - GFF1331 0.66 -0.3
184,526 - GFF1331 0.66 -1.3
184,526 - GFF1331 0.66 -0.2
184,654 + GFF1331 0.78 -0.9
184,654 + GFF1331 0.78 -0.8
184,655 - GFF1331 0.78 -1.2
184,655 - GFF1331 0.78 -0.8
184,655 - GFF1331 0.78 -0.2
184,696 + GFF1331 0.81 -1.7
184,697 - GFF1331 0.81 -1.9
184,697 - GFF1331 0.81 -0.3
184,697 - GFF1331 0.81 -1.0
184,732 + GFF1331 0.85 -0.6

Or see this region's nucleotide sequence