Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1187

Experiment: Ying_all64 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 1
45,819	+		GFF1186	0.71	-0.1
45,820	-		GFF1186	0.72	-0.7
45,820	-		GFF1186	0.72	+1.1
45,820	-		GFF1186	0.72	+1.0
46,440	+				-1.2
46,441	-				-0.9
46,441	-				-1.6
46,512	+				+0.3
46,513	-				+0.2
46,513	-				-0.3
46,513	-				+0.0
46,591	+		GFF1188	0.18	-0.3
46,592	-		GFF1188	0.18	-0.1
46,674	+		GFF1188	0.27	+0.1
46,675	-		GFF1188	0.28	+0.1
46,732	+		GFF1188	0.34	-0.1
46,733	-		GFF1188	0.34	+0.4
46,789	-		GFF1188	0.41	-0.2
46,789	-		GFF1188	0.41	-0.7
46,827	+		GFF1188	0.45	+0.1
46,827	+		GFF1188	0.45	+0.7
46,827	+		GFF1188	0.45	-1.5
46,827	+		GFF1188	0.45	-0.5
46,828	-		GFF1188	0.45	-1.0
46,828	-		GFF1188	0.45	+0.2
46,828	-		GFF1188	0.45	-1.1
46,828	-		GFF1188	0.45	-0.5
46,866	+		GFF1188	0.50	-0.4
46,866	+		GFF1188	0.50	-0.4
46,866	+		GFF1188	0.50	-1.3
46,866	+		GFF1188	0.50	+0.5
46,867	-		GFF1188	0.50	-0.1
46,867	-		GFF1188	0.50	-0.8
46,867	-		GFF1188	0.50	+0.1
46,867	-		GFF1188	0.50	-0.1
46,867	-		GFF1188	0.50	-0.4
46,867	-		GFF1188	0.50	+0.9
47,103	+		GFF1188	0.78	-0.6
47,103	+		GFF1188	0.78	-0.4
47,103	+		GFF1188	0.78	-1.1
47,172	+		GFF1188	0.86	-0.2
47,304	+				+0.2
47,304	+				-0.8
47,364	+				-0.2
47,364	+				+0.3
47,364	+				-0.2
47,365	-				-0.8
47,365	-				-0.6
47,365	-				+0.1
47,365	-				+0.3
47,365	-				-0.2
47,365	-				-0.3