Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1116 and GFF1117 are separated by 268 nucleotides GFF1117 and GFF1118 are separated by 209 nucleotides GFF1118 and GFF1119 are separated by 54 nucleotides
GFF1116 - hypothetical protein, at 47,305 to 47,589
GFF1116
GFF1117 - FIG00758563: hypothetical protein, at 47,858 to 48,619
GFF1117
GFF1118 - hypothetical protein, at 48,829 to 49,170
GFF1118
GFF1119 - Copper tolerance protein, at 49,225 to 49,716
GFF1119
Position (kb) 47
48
49 Strain fitness (log2 ratio) -2
-1
0
1 at 46.931 kb on + strand at 46.932 kb on - strand at 46.932 kb on - strand at 46.970 kb on + strand at 47.004 kb on + strand at 47.004 kb on + strand at 47.068 kb on - strand at 47.156 kb on + strand at 47.156 kb on + strand at 47.156 kb on + strand at 47.307 kb on - strand at 47.468 kb on + strand, within GFF1116 at 47.468 kb on + strand, within GFF1116 at 47.642 kb on + strand at 47.662 kb on + strand at 47.662 kb on + strand at 47.662 kb on + strand at 47.663 kb on - strand at 47.663 kb on - strand at 47.699 kb on + strand at 47.700 kb on - strand at 47.700 kb on - strand at 47.780 kb on + strand at 47.835 kb on - strand at 47.851 kb on + strand at 47.878 kb on - strand at 47.997 kb on + strand, within GFF1117 at 47.998 kb on - strand, within GFF1117 at 47.998 kb on - strand, within GFF1117 at 47.998 kb on - strand, within GFF1117 at 48.037 kb on + strand, within GFF1117 at 48.117 kb on + strand, within GFF1117 at 48.117 kb on + strand, within GFF1117 at 48.118 kb on - strand, within GFF1117 at 48.120 kb on - strand, within GFF1117 at 48.121 kb on + strand, within GFF1117 at 48.122 kb on - strand, within GFF1117 at 48.123 kb on + strand, within GFF1117 at 48.123 kb on + strand, within GFF1117 at 48.124 kb on - strand, within GFF1117 at 48.124 kb on - strand, within GFF1117 at 48.124 kb on - strand, within GFF1117 at 48.129 kb on + strand, within GFF1117 at 48.129 kb on + strand, within GFF1117 at 48.159 kb on + strand, within GFF1117 at 48.160 kb on - strand, within GFF1117 at 48.268 kb on + strand, within GFF1117 at 48.314 kb on - strand, within GFF1117 at 48.637 kb on - strand at 48.643 kb on + strand at 48.753 kb on - strand at 48.764 kb on + strand at 48.765 kb on - strand at 48.775 kb on + strand at 48.797 kb on + strand at 49.181 kb on + strand at 49.182 kb on - strand at 49.182 kb on - strand at 49.207 kb on + strand at 49.227 kb on - strand at 49.227 kb on - strand at 49.227 kb on - strand at 49.268 kb on + strand at 49.268 kb on + strand at 49.268 kb on + strand at 49.269 kb on - strand at 49.269 kb on - strand at 49.364 kb on + strand, within GFF1119 at 49.365 kb on - strand, within GFF1119 at 49.384 kb on - strand, within GFF1119
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 46,931 + -0.1 46,932 - +0.1 46,932 - -0.3 46,970 + +0.4 47,004 + +0.1 47,004 + -0.3 47,068 - +0.2 47,156 + -0.5 47,156 + -1.7 47,156 + -1.2 47,307 - +0.1 47,468 + GFF1116 0.57 -0.3 47,468 + GFF1116 0.57 -0.3 47,642 + -0.2 47,662 + -0.1 47,662 + +0.8 47,662 + +0.6 47,663 - -0.0 47,663 - -0.6 47,699 + -0.2 47,700 - +0.0 47,700 - -0.0 47,780 + +0.1 47,835 - +0.2 47,851 + +0.1 47,878 - -0.1 47,997 + GFF1117 0.18 -0.1 47,998 - GFF1117 0.18 -0.0 47,998 - GFF1117 0.18 +0.1 47,998 - GFF1117 0.18 -0.7 48,037 + GFF1117 0.23 -0.1 48,117 + GFF1117 0.34 +0.2 48,117 + GFF1117 0.34 +1.1 48,118 - GFF1117 0.34 +0.7 48,120 - GFF1117 0.34 +0.6 48,121 + GFF1117 0.35 -0.3 48,122 - GFF1117 0.35 -0.3 48,123 + GFF1117 0.35 -0.3 48,123 + GFF1117 0.35 -0.2 48,124 - GFF1117 0.35 -0.1 48,124 - GFF1117 0.35 +1.6 48,124 - GFF1117 0.35 -0.5 48,129 + GFF1117 0.36 +0.9 48,129 + GFF1117 0.36 -0.0 48,159 + GFF1117 0.40 +0.1 48,160 - GFF1117 0.40 -0.0 48,268 + GFF1117 0.54 -0.6 48,314 - GFF1117 0.60 -0.1 48,637 - +1.3 48,643 + +1.1 48,753 - +0.8 48,764 + -0.6 48,765 - +0.3 48,775 + -0.7 48,797 + +0.5 49,181 + +0.2 49,182 - -0.1 49,182 - -0.4 49,207 + -0.2 49,227 - -0.1 49,227 - -0.2 49,227 - -1.2 49,268 + +0.4 49,268 + -1.9 49,268 + -2.1 49,269 - +0.2 49,269 - -0.7 49,364 + GFF1119 0.28 -0.4 49,365 - GFF1119 0.28 -2.2 49,384 - GFF1119 0.32 +0.8
Or see this region's nucleotide sequence