Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1046 and GFF1047 are separated by 457 nucleotides GFF1047 and GFF1048 are separated by 67 nucleotides GFF1048 and GFF1049 are separated by 13 nucleotides GFF1049 and GFF1050 overlap by 4 nucleotides
GFF1046 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 784,073 to 785,716
GFF1046
GFF1047 - Truncated hemoglobins, at 786,174 to 786,575
GFF1047
GFF1048 - NnrS protein involved in response to NO, at 786,643 to 787,815
GFF1048
GFF1049 - Nitrite-sensitive transcriptional repressor NsrR, at 787,829 to 788,284
GFF1049
GFF1050 - putative membrane protein, at 788,281 to 788,721
GFF1050
Position (kb) 786
787
788 Strain fitness (log2 ratio) -2
-1
0
1 at 785.905 kb on - strand at 785.921 kb on - strand at 786.028 kb on + strand at 786.228 kb on + strand, within GFF1047 at 786.228 kb on + strand, within GFF1047 at 786.256 kb on + strand, within GFF1047 at 786.256 kb on + strand, within GFF1047 at 786.256 kb on + strand, within GFF1047 at 786.257 kb on - strand, within GFF1047 at 786.990 kb on + strand, within GFF1048 at 786.994 kb on + strand, within GFF1048 at 787.396 kb on + strand, within GFF1048 at 787.594 kb on + strand, within GFF1048 at 787.595 kb on - strand, within GFF1048 at 787.708 kb on + strand at 787.853 kb on + strand at 787.853 kb on + strand at 787.874 kb on + strand at 787.929 kb on - strand, within GFF1049 at 787.929 kb on - strand, within GFF1049 at 788.201 kb on - strand, within GFF1049 at 788.287 kb on + strand at 788.288 kb on - strand at 788.288 kb on - strand at 788.687 kb on + strand at 788.743 kb on + strand at 788.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 785,905 - +0.4 785,921 - -0.3 786,028 + +0.3 786,228 + GFF1047 0.13 -0.7 786,228 + GFF1047 0.13 +0.2 786,256 + GFF1047 0.20 -0.5 786,256 + GFF1047 0.20 -1.0 786,256 + GFF1047 0.20 -0.3 786,257 - GFF1047 0.21 +0.5 786,990 + GFF1048 0.30 +0.2 786,994 + GFF1048 0.30 -0.8 787,396 + GFF1048 0.64 +0.2 787,594 + GFF1048 0.81 +0.9 787,595 - GFF1048 0.81 +1.2 787,708 + -0.3 787,853 + +0.3 787,853 + +0.3 787,874 + -0.1 787,929 - GFF1049 0.22 -0.3 787,929 - GFF1049 0.22 -2.4 788,201 - GFF1049 0.82 +0.5 788,287 + -0.2 788,288 - -0.4 788,288 - +0.0 788,687 + +0.4 788,743 + -0.4 788,744 - +0.1
Or see this region's nucleotide sequence