Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1034 and GFF1035 are separated by 136 nucleotides GFF1035 and GFF1036 are separated by 27 nucleotides GFF1036 and GFF1037 are separated by 515 nucleotides
GFF1034 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 772,418 to 774,667
GFF1034
GFF1035 - DNA-directed RNA polymerase omega subunit (EC 2.7.7.6), at 774,804 to 775,007
GFF1035
GFF1036 - Guanylate kinase (EC 2.7.4.8), at 775,035 to 775,655
GFF1036
GFF1037 - Esterase/lipase, at 776,171 to 776,971
GFF1037
Position (kb) 775
776 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 774.674 kb on - strand at 774.674 kb on - strand at 774.674 kb on - strand at 774.674 kb on - strand at 774.679 kb on - strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.737 kb on + strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.738 kb on - strand at 774.934 kb on + strand, within GFF1035 at 774.934 kb on + strand, within GFF1035 at 774.934 kb on + strand, within GFF1035 at 775.031 kb on + strand at 775.031 kb on + strand at 775.660 kb on - strand at 775.711 kb on + strand at 775.731 kb on + strand at 775.731 kb on + strand at 775.732 kb on - strand at 775.732 kb on - strand at 775.732 kb on - strand at 775.748 kb on + strand at 775.748 kb on + strand at 775.748 kb on + strand at 775.748 kb on + strand at 775.749 kb on - strand at 775.750 kb on + strand at 775.751 kb on - strand at 775.802 kb on + strand at 775.802 kb on + strand at 775.802 kb on + strand at 775.803 kb on - strand at 775.803 kb on - strand at 775.803 kb on - strand at 775.803 kb on - strand at 775.803 kb on - strand at 775.836 kb on + strand at 775.837 kb on - strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.995 kb on + strand at 775.996 kb on - strand at 775.996 kb on - strand at 775.996 kb on - strand at 775.996 kb on - strand at 775.997 kb on + strand at 775.997 kb on + strand at 775.997 kb on + strand at 775.997 kb on + strand at 775.998 kb on - strand at 775.998 kb on - strand at 775.998 kb on - strand at 776.104 kb on + strand at 776.104 kb on + strand at 776.104 kb on + strand at 776.104 kb on + strand at 776.104 kb on + strand at 776.104 kb on + strand at 776.105 kb on + strand at 776.164 kb on + strand at 776.164 kb on + strand at 776.164 kb on + strand at 776.164 kb on + strand at 776.165 kb on - strand at 776.165 kb on - strand at 776.165 kb on - strand at 776.219 kb on + strand at 776.219 kb on + strand at 776.219 kb on + strand at 776.220 kb on - strand at 776.220 kb on - strand at 776.220 kb on - strand at 776.220 kb on - strand at 776.220 kb on - strand at 776.220 kb on - strand at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.388 kb on + strand, within GFF1037 at 776.389 kb on - strand, within GFF1037 at 776.389 kb on - strand, within GFF1037 at 776.389 kb on - strand, within GFF1037 at 776.412 kb on + strand, within GFF1037 at 776.412 kb on + strand, within GFF1037 at 776.413 kb on - strand, within GFF1037 at 776.413 kb on - strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.502 kb on + strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.503 kb on - strand, within GFF1037 at 776.505 kb on + strand, within GFF1037 at 776.609 kb on + strand, within GFF1037
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 774,674 - +0.6 774,674 - -1.2 774,674 - -0.7 774,674 - +0.2 774,679 - -0.5 774,737 + +0.8 774,737 + +0.3 774,737 + -0.3 774,737 + +0.2 774,737 + -1.4 774,737 + -0.5 774,737 + -0.5 774,737 + -0.6 774,737 + -0.7 774,737 + -0.5 774,737 + +0.4 774,737 + +1.1 774,738 - -0.3 774,738 - +0.5 774,738 - +0.2 774,738 - +0.0 774,738 - +0.0 774,738 - -0.1 774,738 - +2.0 774,738 - +1.9 774,738 - +0.6 774,738 - -1.6 774,738 - +0.5 774,738 - +0.3 774,738 - -0.1 774,738 - +0.2 774,738 - +0.8 774,738 - +0.0 774,738 - +0.7 774,738 - +0.0 774,934 + GFF1035 0.64 -0.7 774,934 + GFF1035 0.64 -1.2 774,934 + GFF1035 0.64 -2.0 775,031 + -1.3 775,031 + -3.2 775,660 - -0.4 775,711 + -2.0 775,731 + -1.1 775,731 + +0.4 775,732 - -0.2 775,732 - +0.1 775,732 - +0.8 775,748 + -1.4 775,748 + -0.2 775,748 + -0.3 775,748 + -1.4 775,749 - -1.1 775,750 + -0.8 775,751 - -0.6 775,802 + +0.1 775,802 + -0.2 775,802 + +0.6 775,803 - +1.2 775,803 - +0.7 775,803 - +0.4 775,803 - +1.6 775,803 - -0.0 775,836 + +0.0 775,837 - -0.6 775,995 + +1.2 775,995 + -0.8 775,995 + -0.1 775,995 + -0.0 775,995 + +0.3 775,995 + +0.9 775,995 + +0.4 775,995 + +0.1 775,996 - +0.5 775,996 - +0.5 775,996 - -1.1 775,996 - +0.2 775,997 + +0.6 775,997 + +0.6 775,997 + +0.8 775,997 + +0.5 775,998 - -0.5 775,998 - +0.7 775,998 - +0.0 776,104 + -0.2 776,104 + -0.4 776,104 + +0.0 776,104 + +0.1 776,104 + -0.5 776,104 + +0.6 776,105 + -0.6 776,164 + -0.9 776,164 + +1.0 776,164 + -0.8 776,164 + -0.5 776,165 - +1.2 776,165 - +0.3 776,165 - -1.3 776,219 + -0.1 776,219 + -0.2 776,219 + -0.0 776,220 - +0.3 776,220 - -1.0 776,220 - -0.6 776,220 - -1.1 776,220 - -0.3 776,220 - +0.7 776,388 + GFF1037 0.27 +0.1 776,388 + GFF1037 0.27 -0.5 776,388 + GFF1037 0.27 +0.3 776,388 + GFF1037 0.27 -0.2 776,388 + GFF1037 0.27 -0.1 776,388 + GFF1037 0.27 -0.6 776,388 + GFF1037 0.27 -0.2 776,389 - GFF1037 0.27 +0.0 776,389 - GFF1037 0.27 -0.1 776,389 - GFF1037 0.27 +0.8 776,412 + GFF1037 0.30 -0.4 776,412 + GFF1037 0.30 -0.7 776,413 - GFF1037 0.30 +0.9 776,413 - GFF1037 0.30 +0.0 776,502 + GFF1037 0.41 -0.5 776,502 + GFF1037 0.41 -2.5 776,502 + GFF1037 0.41 +0.6 776,502 + GFF1037 0.41 -1.6 776,502 + GFF1037 0.41 -0.5 776,503 - GFF1037 0.41 +0.0 776,503 - GFF1037 0.41 -0.1 776,503 - GFF1037 0.41 +1.4 776,503 - GFF1037 0.41 +0.3 776,503 - GFF1037 0.41 -0.1 776,503 - GFF1037 0.41 +0.7 776,505 + GFF1037 0.42 +0.1 776,609 + GFF1037 0.55 -0.2
Or see this region's nucleotide sequence