Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1028 and GFF1029 are separated by 25 nucleotides GFF1029 and GFF1030 are separated by 40 nucleotides GFF1030 and GFF1031 overlap by 4 nucleotides
GFF1028 - putative cytochrome P450 hydroxylase, at 766,201 to 767,421
GFF1028
GFF1029 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like, at 767,447 to 768,448
GFF1029
GFF1030 - Ortho-halobenzoate 1,2-dioxygenase beta-ISP protein OhbA, at 768,489 to 768,965
GFF1030
GFF1031 - Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB, at 768,962 to 770,155
GFF1031
Position (kb) 767
768
769 Strain fitness (log2 ratio) -1
0
1 at 766.575 kb on - strand, within GFF1028 at 766.916 kb on + strand, within GFF1028 at 767.333 kb on + strand at 767.402 kb on + strand at 767.580 kb on + strand, within GFF1029 at 767.581 kb on - strand, within GFF1029 at 767.733 kb on + strand, within GFF1029 at 767.733 kb on + strand, within GFF1029 at 767.763 kb on + strand, within GFF1029 at 768.289 kb on + strand, within GFF1029 at 768.289 kb on + strand, within GFF1029 at 768.290 kb on - strand, within GFF1029 at 768.290 kb on - strand, within GFF1029 at 768.461 kb on + strand at 768.461 kb on + strand at 768.461 kb on + strand at 768.461 kb on + strand at 768.595 kb on + strand, within GFF1030 at 768.595 kb on + strand, within GFF1030 at 768.796 kb on + strand, within GFF1030 at 769.224 kb on + strand, within GFF1031 at 769.225 kb on - strand, within GFF1031 at 769.292 kb on + strand, within GFF1031 at 769.293 kb on - strand, within GFF1031 at 769.293 kb on - strand, within GFF1031 at 769.361 kb on + strand, within GFF1031 at 769.431 kb on + strand, within GFF1031 at 769.431 kb on + strand, within GFF1031 at 769.432 kb on - strand, within GFF1031 at 769.442 kb on - strand, within GFF1031 at 769.442 kb on - strand, within GFF1031 at 769.442 kb on - strand, within GFF1031
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 766,575 - GFF1028 0.31 +0.4 766,916 + GFF1028 0.59 +0.1 767,333 + -0.2 767,402 + +0.3 767,580 + GFF1029 0.13 +0.9 767,581 - GFF1029 0.13 -1.7 767,733 + GFF1029 0.29 +0.2 767,733 + GFF1029 0.29 -0.2 767,763 + GFF1029 0.32 -1.3 768,289 + GFF1029 0.84 -0.1 768,289 + GFF1029 0.84 +1.2 768,290 - GFF1029 0.84 +0.8 768,290 - GFF1029 0.84 +0.0 768,461 + +0.7 768,461 + -0.2 768,461 + +0.1 768,461 + -0.1 768,595 + GFF1030 0.22 -0.6 768,595 + GFF1030 0.22 -0.9 768,796 + GFF1030 0.64 -0.1 769,224 + GFF1031 0.22 -0.4 769,225 - GFF1031 0.22 -0.5 769,292 + GFF1031 0.28 +0.0 769,293 - GFF1031 0.28 +1.4 769,293 - GFF1031 0.28 +0.0 769,361 + GFF1031 0.33 +0.1 769,431 + GFF1031 0.39 +0.9 769,431 + GFF1031 0.39 -0.2 769,432 - GFF1031 0.39 +0.9 769,442 - GFF1031 0.40 -0.3 769,442 - GFF1031 0.40 +0.4 769,442 - GFF1031 0.40 +0.9
Or see this region's nucleotide sequence