Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1020 and GFF1021 are separated by 298 nucleotides GFF1021 and GFF1022 are separated by 45 nucleotides GFF1022 and GFF1023 overlap by 4 nucleotides
GFF1020 - TRAP transporter solute receptor, unknown substrate 3, at 758,607 to 759,659
GFF1020
GFF1021 - Mobile element protein, at 759,958 to 760,272
GFF1021
GFF1022 - 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262), at 760,318 to 761,268
GFF1022
GFF1023 - TRAP transporter solute receptor, unknown substrate 3, at 761,265 to 762,317
GFF1023
Position (kb) 759
760
761 Strain fitness (log2 ratio) -2
-1
0
1
2 at 758.988 kb on + strand, within GFF1020 at 759.110 kb on - strand, within GFF1020 at 759.125 kb on + strand, within GFF1020 at 759.125 kb on + strand, within GFF1020 at 759.125 kb on + strand, within GFF1020 at 759.125 kb on + strand, within GFF1020 at 759.126 kb on - strand, within GFF1020 at 759.169 kb on + strand, within GFF1020 at 759.170 kb on - strand, within GFF1020 at 759.170 kb on - strand, within GFF1020 at 759.215 kb on + strand, within GFF1020 at 759.216 kb on - strand, within GFF1020 at 759.296 kb on - strand, within GFF1020 at 759.299 kb on + strand, within GFF1020 at 759.300 kb on - strand, within GFF1020 at 759.300 kb on - strand, within GFF1020 at 759.418 kb on + strand, within GFF1020 at 759.418 kb on + strand, within GFF1020 at 759.418 kb on + strand, within GFF1020 at 759.418 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.510 kb on + strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.511 kb on - strand, within GFF1020 at 759.531 kb on + strand, within GFF1020 at 759.531 kb on + strand, within GFF1020 at 759.531 kb on + strand, within GFF1020 at 759.531 kb on + strand, within GFF1020 at 759.531 kb on + strand, within GFF1020 at 759.532 kb on - strand, within GFF1020 at 759.532 kb on - strand, within GFF1020 at 759.532 kb on - strand, within GFF1020 at 759.532 kb on - strand, within GFF1020 at 759.532 kb on - strand, within GFF1020 at 759.624 kb on + strand at 759.624 kb on + strand at 759.625 kb on - strand at 759.686 kb on + strand at 759.690 kb on + strand at 759.690 kb on + strand at 759.690 kb on + strand at 759.690 kb on + strand at 759.690 kb on + strand at 759.691 kb on - strand at 759.691 kb on - strand at 759.691 kb on - strand at 759.691 kb on - strand at 759.691 kb on - strand at 759.761 kb on + strand at 759.785 kb on + strand at 759.786 kb on - strand at 759.786 kb on - strand at 759.815 kb on + strand at 759.816 kb on - strand at 759.816 kb on - strand at 759.816 kb on - strand at 759.835 kb on + strand at 759.835 kb on + strand at 759.835 kb on + strand at 759.983 kb on + strand at 759.983 kb on + strand at 759.983 kb on + strand at 759.984 kb on - strand at 759.984 kb on - strand at 760.036 kb on + strand, within GFF1021 at 760.036 kb on + strand, within GFF1021 at 760.036 kb on + strand, within GFF1021 at 760.037 kb on - strand, within GFF1021 at 760.037 kb on - strand, within GFF1021 at 760.037 kb on - strand, within GFF1021 at 760.037 kb on - strand, within GFF1021 at 760.037 kb on - strand, within GFF1021 at 760.058 kb on - strand, within GFF1021 at 760.058 kb on - strand, within GFF1021 at 760.117 kb on + strand, within GFF1021 at 760.117 kb on + strand, within GFF1021 at 760.118 kb on - strand, within GFF1021 at 760.164 kb on - strand, within GFF1021 at 760.202 kb on - strand, within GFF1021 at 760.291 kb on + strand at 760.291 kb on + strand at 760.292 kb on - strand at 760.347 kb on - strand at 760.520 kb on + strand, within GFF1022 at 760.521 kb on - strand, within GFF1022 at 760.676 kb on - strand, within GFF1022 at 760.903 kb on + strand, within GFF1022 at 760.904 kb on - strand, within GFF1022 at 760.904 kb on - strand, within GFF1022 at 760.904 kb on - strand, within GFF1022 at 760.905 kb on + strand, within GFF1022 at 760.905 kb on + strand, within GFF1022 at 760.905 kb on + strand, within GFF1022 at 760.906 kb on - strand, within GFF1022 at 760.906 kb on - strand, within GFF1022 at 760.906 kb on - strand, within GFF1022 at 760.906 kb on - strand, within GFF1022 at 761.042 kb on - strand, within GFF1022 at 761.092 kb on + strand, within GFF1022 at 761.092 kb on + strand, within GFF1022 at 761.093 kb on - strand, within GFF1022 at 761.093 kb on - strand, within GFF1022 at 761.093 kb on - strand, within GFF1022 at 761.093 kb on - strand, within GFF1022 at 761.103 kb on + strand, within GFF1022 at 761.157 kb on + strand, within GFF1022 at 761.158 kb on - strand, within GFF1022 at 761.160 kb on + strand, within GFF1022 at 761.160 kb on + strand, within GFF1022 at 761.160 kb on + strand, within GFF1022 at 761.161 kb on - strand, within GFF1022 at 761.161 kb on - strand, within GFF1022 at 761.161 kb on - strand, within GFF1022 at 761.161 kb on - strand, within GFF1022
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 758,988 + GFF1020 0.36 -0.3 759,110 - GFF1020 0.48 +0.0 759,125 + GFF1020 0.49 -0.7 759,125 + GFF1020 0.49 +0.1 759,125 + GFF1020 0.49 +1.1 759,125 + GFF1020 0.49 -0.1 759,126 - GFF1020 0.49 +1.1 759,169 + GFF1020 0.53 +1.2 759,170 - GFF1020 0.53 -0.0 759,170 - GFF1020 0.53 +0.0 759,215 + GFF1020 0.58 +0.3 759,216 - GFF1020 0.58 -1.0 759,296 - GFF1020 0.65 -0.2 759,299 + GFF1020 0.66 -0.7 759,300 - GFF1020 0.66 -0.1 759,300 - GFF1020 0.66 -0.4 759,418 + GFF1020 0.77 +0.7 759,418 + GFF1020 0.77 +0.1 759,418 + GFF1020 0.77 +0.1 759,418 + GFF1020 0.77 -1.7 759,510 + GFF1020 0.86 +0.6 759,510 + GFF1020 0.86 -0.3 759,510 + GFF1020 0.86 -0.1 759,510 + GFF1020 0.86 +0.1 759,510 + GFF1020 0.86 -0.4 759,510 + GFF1020 0.86 -0.1 759,510 + GFF1020 0.86 +0.1 759,511 - GFF1020 0.86 -0.7 759,511 - GFF1020 0.86 +0.8 759,511 - GFF1020 0.86 +1.7 759,511 - GFF1020 0.86 +2.2 759,511 - GFF1020 0.86 +0.2 759,511 - GFF1020 0.86 +0.4 759,531 + GFF1020 0.88 -0.8 759,531 + GFF1020 0.88 +0.5 759,531 + GFF1020 0.88 -1.8 759,531 + GFF1020 0.88 -0.1 759,531 + GFF1020 0.88 +0.4 759,532 - GFF1020 0.88 +0.2 759,532 - GFF1020 0.88 -1.5 759,532 - GFF1020 0.88 +0.0 759,532 - GFF1020 0.88 -1.0 759,532 - GFF1020 0.88 +0.3 759,624 + -1.7 759,624 + -0.2 759,625 - +0.2 759,686 + +1.4 759,690 + +0.1 759,690 + +0.9 759,690 + -0.4 759,690 + +1.0 759,690 + -0.4 759,691 - -0.1 759,691 - -0.8 759,691 - -1.6 759,691 - -1.7 759,691 - +0.3 759,761 + -0.9 759,785 + +0.2 759,786 - +0.3 759,786 - -0.2 759,815 + -0.4 759,816 - -0.1 759,816 - -0.3 759,816 - +0.4 759,835 + -0.1 759,835 + -0.0 759,835 + +0.3 759,983 + +0.5 759,983 + +0.6 759,983 + +0.6 759,984 - +0.2 759,984 - -1.3 760,036 + GFF1021 0.25 +0.1 760,036 + GFF1021 0.25 -1.2 760,036 + GFF1021 0.25 +0.3 760,037 - GFF1021 0.25 -0.1 760,037 - GFF1021 0.25 -0.4 760,037 - GFF1021 0.25 -0.7 760,037 - GFF1021 0.25 -0.5 760,037 - GFF1021 0.25 -2.2 760,058 - GFF1021 0.32 -0.2 760,058 - GFF1021 0.32 +1.7 760,117 + GFF1021 0.50 +0.3 760,117 + GFF1021 0.50 -1.2 760,118 - GFF1021 0.51 -0.7 760,164 - GFF1021 0.65 +0.2 760,202 - GFF1021 0.77 -1.3 760,291 + -0.9 760,291 + -0.2 760,292 - -0.5 760,347 - +0.8 760,520 + GFF1022 0.21 -0.1 760,521 - GFF1022 0.21 -0.6 760,676 - GFF1022 0.38 -0.6 760,903 + GFF1022 0.62 +0.7 760,904 - GFF1022 0.62 +0.2 760,904 - GFF1022 0.62 -0.7 760,904 - GFF1022 0.62 -1.0 760,905 + GFF1022 0.62 +0.0 760,905 + GFF1022 0.62 -0.8 760,905 + GFF1022 0.62 +0.1 760,906 - GFF1022 0.62 +0.9 760,906 - GFF1022 0.62 -0.4 760,906 - GFF1022 0.62 -2.0 760,906 - GFF1022 0.62 -1.0 761,042 - GFF1022 0.76 -0.8 761,092 + GFF1022 0.81 +0.4 761,092 + GFF1022 0.81 -0.3 761,093 - GFF1022 0.81 +0.6 761,093 - GFF1022 0.81 +0.1 761,093 - GFF1022 0.81 +0.5 761,093 - GFF1022 0.81 -2.2 761,103 + GFF1022 0.83 +0.9 761,157 + GFF1022 0.88 -0.4 761,158 - GFF1022 0.88 -0.2 761,160 + GFF1022 0.89 -0.1 761,160 + GFF1022 0.89 -0.8 761,160 + GFF1022 0.89 -2.5 761,161 - GFF1022 0.89 +0.3 761,161 - GFF1022 0.89 +0.5 761,161 - GFF1022 0.89 -0.4 761,161 - GFF1022 0.89 -0.1
Or see this region's nucleotide sequence