Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1011 and GFF1012 are separated by 36 nucleotides GFF1012 and GFF1013 overlap by 1 nucleotides GFF1013 and GFF1014 overlap by 4 nucleotides GFF1014 and GFF1015 overlap by 4 nucleotides
GFF1011 - Transcriptional regulator, IclR family, at 749,892 to 750,578
GFF1011
GFF1012 - Benzoate transport, ATP binding protein, at 750,615 to 751,337
GFF1012
GFF1013 - Benzoate transport, ATPase component, at 751,337 to 752,098
GFF1013
GFF1014 - Benzoate transport, inner-membrane translocator precursor, at 752,095 to 753,087
GFF1014
GFF1015 - Benzoate transport, inner-membrane translocator, at 753,084 to 753,947
GFF1015
Position (kb) 751
752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 750.337 kb on + strand, within GFF1011 at 750.337 kb on + strand, within GFF1011 at 750.337 kb on + strand, within GFF1011 at 750.338 kb on - strand, within GFF1011 at 750.338 kb on - strand, within GFF1011 at 750.345 kb on + strand, within GFF1011 at 750.345 kb on + strand, within GFF1011 at 750.345 kb on + strand, within GFF1011 at 750.345 kb on + strand, within GFF1011 at 750.381 kb on + strand, within GFF1011 at 750.382 kb on - strand, within GFF1011 at 750.382 kb on - strand, within GFF1011 at 750.382 kb on - strand, within GFF1011 at 750.388 kb on + strand, within GFF1011 at 750.517 kb on + strand at 750.517 kb on + strand at 750.517 kb on + strand at 750.517 kb on + strand at 750.518 kb on - strand at 750.518 kb on - strand at 750.518 kb on - strand at 750.524 kb on + strand at 750.524 kb on + strand at 750.525 kb on - strand at 750.576 kb on + strand at 750.576 kb on + strand at 750.576 kb on + strand at 750.577 kb on - strand at 750.577 kb on - strand at 750.577 kb on - strand at 750.580 kb on + strand at 750.618 kb on + strand at 750.618 kb on + strand at 750.619 kb on - strand at 750.619 kb on - strand at 750.619 kb on - strand at 750.619 kb on - strand at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.979 kb on + strand, within GFF1012 at 750.980 kb on - strand, within GFF1012 at 750.980 kb on - strand, within GFF1012 at 750.980 kb on - strand, within GFF1012 at 751.078 kb on + strand, within GFF1012 at 751.356 kb on + strand at 751.356 kb on + strand at 751.356 kb on + strand at 751.357 kb on - strand at 752.235 kb on - strand, within GFF1014 at 752.402 kb on - strand, within GFF1014 at 752.402 kb on - strand, within GFF1014 at 752.529 kb on - strand, within GFF1014 at 752.558 kb on + strand, within GFF1014 at 752.559 kb on - strand, within GFF1014 at 752.633 kb on + strand, within GFF1014 at 752.633 kb on + strand, within GFF1014 at 752.720 kb on + strand, within GFF1014 at 752.867 kb on + strand, within GFF1014 at 752.868 kb on - strand, within GFF1014 at 752.868 kb on - strand, within GFF1014
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 750,337 + GFF1011 0.65 -0.3 750,337 + GFF1011 0.65 +0.2 750,337 + GFF1011 0.65 +0.1 750,338 - GFF1011 0.65 +0.4 750,338 - GFF1011 0.65 -0.4 750,345 + GFF1011 0.66 +2.4 750,345 + GFF1011 0.66 -0.6 750,345 + GFF1011 0.66 -0.0 750,345 + GFF1011 0.66 +0.1 750,381 + GFF1011 0.71 -0.6 750,382 - GFF1011 0.71 -1.5 750,382 - GFF1011 0.71 +0.8 750,382 - GFF1011 0.71 -0.4 750,388 + GFF1011 0.72 -1.2 750,517 + -0.3 750,517 + -0.4 750,517 + -0.8 750,517 + -0.6 750,518 - -0.8 750,518 - -1.3 750,518 - -0.6 750,524 + +0.9 750,524 + -0.8 750,525 - -0.3 750,576 + +2.2 750,576 + +0.0 750,576 + +2.4 750,577 - -0.3 750,577 - +0.4 750,577 - -0.2 750,580 + +0.0 750,618 + +0.0 750,618 + -0.1 750,619 - +0.3 750,619 - +0.8 750,619 - -0.6 750,619 - +1.9 750,979 + GFF1012 0.50 -0.4 750,979 + GFF1012 0.50 +0.3 750,979 + GFF1012 0.50 +0.2 750,979 + GFF1012 0.50 -0.6 750,979 + GFF1012 0.50 -0.3 750,979 + GFF1012 0.50 -0.7 750,979 + GFF1012 0.50 -0.0 750,980 - GFF1012 0.50 +1.8 750,980 - GFF1012 0.50 +0.1 750,980 - GFF1012 0.50 -2.8 751,078 + GFF1012 0.64 -0.2 751,356 + +0.1 751,356 + +0.1 751,356 + -0.8 751,357 - +0.2 752,235 - GFF1014 0.14 +0.5 752,402 - GFF1014 0.31 +2.2 752,402 - GFF1014 0.31 -1.6 752,529 - GFF1014 0.44 -0.2 752,558 + GFF1014 0.47 -0.5 752,559 - GFF1014 0.47 -1.3 752,633 + GFF1014 0.54 -0.7 752,633 + GFF1014 0.54 +0.7 752,720 + GFF1014 0.63 -0.3 752,867 + GFF1014 0.78 +0.6 752,868 - GFF1014 0.78 +0.7 752,868 - GFF1014 0.78 +0.0
Or see this region's nucleotide sequence