Strain Fitness in Escherichia fergusonii Becca around EFB2_02277

Experiment: BHIS no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_02275 and EFB2_02276 are separated by 52 nucleotidesEFB2_02276 and EFB2_02277 are separated by 450 nucleotidesEFB2_02277 and EFB2_02278 are separated by 14 nucleotides EFB2_02275: EFB2_02275 - 50S ribosomal protein L35, at 2,411,117 to 2,411,314 _02275 EFB2_02276: EFB2_02276 - 50S ribosomal protein L20, at 2,411,367 to 2,411,723 _02276 EFB2_02277: EFB2_02277 - Phenylalanine--tRNA ligase alpha subunit, at 2,412,174 to 2,413,157 _02277 EFB2_02278: EFB2_02278 - Phenylalanine--tRNA ligase beta subunit, at 2,413,172 to 2,415,559 _02278 Position (kb) 2412 2413 2414Strain fitness (log2 ratio) -2 -1 0 1 2at 2411.795 kb on + strandat 2412.005 kb on + strandat 2412.005 kb on + strandat 2412.054 kb on + strandat 2412.054 kb on + strandat 2412.058 kb on + strandat 2412.058 kb on + strandat 2412.058 kb on + strandat 2412.058 kb on + strandat 2412.058 kb on + strandat 2412.058 kb on + strandat 2412.058 kb on + strandat 2412.062 kb on + strandat 2412.062 kb on + strandat 2412.062 kb on + strandat 2412.062 kb on + strandat 2412.062 kb on + strandat 2412.104 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS no phage control
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2,411,795 + +0.6
2,412,005 + -0.9
2,412,005 + -0.6
2,412,054 + -0.5
2,412,054 + -1.9
2,412,058 + -0.8
2,412,058 + +0.1
2,412,058 + -1.1
2,412,058 + -1.5
2,412,058 + +0.5
2,412,058 + -1.4
2,412,058 + +0.2
2,412,062 + +0.1
2,412,062 + +1.3
2,412,062 + +2.0
2,412,062 + +1.2
2,412,062 + -1.7
2,412,104 + -1.5

Or see this region's nucleotide sequence