Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02640

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02639 and OHPLBJKB_02640 are separated by 586 nucleotidesOHPLBJKB_02640 and OHPLBJKB_02641 are separated by 50 nucleotidesOHPLBJKB_02641 and OHPLBJKB_02642 are separated by 155 nucleotidesOHPLBJKB_02642 and OHPLBJKB_02643 are separated by 53 nucleotides OHPLBJKB_02639: OHPLBJKB_02639 - putative diguanylate cyclase DgcT, at 2,745,329 to 2,746,687 _02639 OHPLBJKB_02640: OHPLBJKB_02640 - Poly-beta-1,6-N-acetyl-D-glucosamine export protein, at 2,747,274 to 2,748,635 _02640 OHPLBJKB_02641: OHPLBJKB_02641 - IS1 family transposase IS1A, at 2,748,686 to 2,748,961 _02641 OHPLBJKB_02642: OHPLBJKB_02642 - IS1 family transposase IS1S, at 2,749,117 to 2,749,383 _02642 OHPLBJKB_02643: OHPLBJKB_02643 - Poly-beta-1,6-N-acetyl-D-glucosamine export protein, at 2,749,437 to 2,750,474 _02643 Position (kb) 2747 2748 2749Strain fitness (log2 ratio) -2 -1 0 1 2at 2746.311 kb on - strand, within OHPLBJKB_02639at 2746.652 kb on + strandat 2746.661 kb on - strandat 2746.712 kb on + strandat 2746.733 kb on + strandat 2746.796 kb on - strandat 2746.833 kb on + strandat 2746.834 kb on - strandat 2746.834 kb on - strandat 2746.834 kb on - strandat 2746.864 kb on + strandat 2746.865 kb on - strandat 2746.865 kb on - strandat 2746.865 kb on - strandat 2746.870 kb on + strandat 2746.913 kb on - strandat 2747.009 kb on + strandat 2747.113 kb on + strandat 2747.256 kb on + strandat 2747.277 kb on + strandat 2747.278 kb on - strandat 2747.420 kb on + strand, within OHPLBJKB_02640at 2747.420 kb on + strand, within OHPLBJKB_02640at 2747.421 kb on - strand, within OHPLBJKB_02640at 2747.421 kb on - strand, within OHPLBJKB_02640at 2747.421 kb on - strand, within OHPLBJKB_02640at 2747.627 kb on + strand, within OHPLBJKB_02640at 2747.628 kb on - strand, within OHPLBJKB_02640at 2747.628 kb on - strand, within OHPLBJKB_02640at 2747.720 kb on + strand, within OHPLBJKB_02640at 2747.790 kb on + strand, within OHPLBJKB_02640at 2747.790 kb on + strand, within OHPLBJKB_02640at 2747.790 kb on + strand, within OHPLBJKB_02640at 2747.791 kb on - strand, within OHPLBJKB_02640at 2747.791 kb on - strand, within OHPLBJKB_02640at 2747.791 kb on - strand, within OHPLBJKB_02640at 2747.792 kb on + strand, within OHPLBJKB_02640at 2747.792 kb on + strand, within OHPLBJKB_02640at 2747.796 kb on + strand, within OHPLBJKB_02640at 2747.796 kb on + strand, within OHPLBJKB_02640at 2747.797 kb on - strand, within OHPLBJKB_02640at 2747.797 kb on - strand, within OHPLBJKB_02640at 2747.797 kb on - strand, within OHPLBJKB_02640at 2747.797 kb on - strand, within OHPLBJKB_02640at 2747.828 kb on - strand, within OHPLBJKB_02640at 2747.899 kb on + strand, within OHPLBJKB_02640at 2747.952 kb on - strand, within OHPLBJKB_02640at 2747.993 kb on + strand, within OHPLBJKB_02640at 2748.111 kb on - strand, within OHPLBJKB_02640at 2748.136 kb on + strand, within OHPLBJKB_02640at 2748.156 kb on - strand, within OHPLBJKB_02640at 2748.240 kb on + strand, within OHPLBJKB_02640at 2748.241 kb on - strand, within OHPLBJKB_02640at 2748.404 kb on + strand, within OHPLBJKB_02640at 2748.404 kb on + strand, within OHPLBJKB_02640at 2748.405 kb on - strand, within OHPLBJKB_02640at 2748.413 kb on + strand, within OHPLBJKB_02640at 2748.515 kb on + strandat 2748.515 kb on + strandat 2748.515 kb on + strandat 2748.516 kb on - strandat 2748.516 kb on - strandat 2748.558 kb on + strandat 2748.558 kb on + strandat 2748.559 kb on - strandat 2748.607 kb on + strandat 2748.607 kb on + strandat 2748.607 kb on + strandat 2748.608 kb on - strandat 2748.661 kb on - strandat 2748.661 kb on - strandat 2748.661 kb on - strandat 2748.661 kb on - strandat 2749.451 kb on + strandat 2749.451 kb on + strandat 2749.451 kb on + strandat 2749.451 kb on + strandat 2749.458 kb on - strandat 2749.495 kb on + strandat 2749.522 kb on + strandat 2749.523 kb on - strandat 2749.567 kb on + strand, within OHPLBJKB_02643at 2749.591 kb on + strand, within OHPLBJKB_02643at 2749.592 kb on - strand, within OHPLBJKB_02643at 2749.592 kb on - strand, within OHPLBJKB_02643at 2749.595 kb on + strand, within OHPLBJKB_02643at 2749.596 kb on - strand, within OHPLBJKB_02643at 2749.596 kb on - strand, within OHPLBJKB_02643at 2749.596 kb on - strand, within OHPLBJKB_02643at 2749.596 kb on - strand, within OHPLBJKB_02643

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,746,311 - OHPLBJKB_02639 0.72 +0.5
2,746,652 + -0.2
2,746,661 - -2.6
2,746,712 + +1.2
2,746,733 + +0.6
2,746,796 - +2.2
2,746,833 + -0.7
2,746,834 - -0.4
2,746,834 - +0.5
2,746,834 - +0.5
2,746,864 + +0.5
2,746,865 - -0.9
2,746,865 - +0.4
2,746,865 - -0.8
2,746,870 + -0.3
2,746,913 - +0.6
2,747,009 + +0.5
2,747,113 + +0.9
2,747,256 + -0.0
2,747,277 + +0.3
2,747,278 - +0.8
2,747,420 + OHPLBJKB_02640 0.11 -0.1
2,747,420 + OHPLBJKB_02640 0.11 -1.1
2,747,421 - OHPLBJKB_02640 0.11 +0.8
2,747,421 - OHPLBJKB_02640 0.11 -0.1
2,747,421 - OHPLBJKB_02640 0.11 -0.1
2,747,627 + OHPLBJKB_02640 0.26 -0.5
2,747,628 - OHPLBJKB_02640 0.26 +0.6
2,747,628 - OHPLBJKB_02640 0.26 -1.6
2,747,720 + OHPLBJKB_02640 0.33 -0.6
2,747,790 + OHPLBJKB_02640 0.38 +0.7
2,747,790 + OHPLBJKB_02640 0.38 -0.4
2,747,790 + OHPLBJKB_02640 0.38 -0.6
2,747,791 - OHPLBJKB_02640 0.38 +0.8
2,747,791 - OHPLBJKB_02640 0.38 -0.9
2,747,791 - OHPLBJKB_02640 0.38 -0.7
2,747,792 + OHPLBJKB_02640 0.38 +0.9
2,747,792 + OHPLBJKB_02640 0.38 +1.4
2,747,796 + OHPLBJKB_02640 0.38 +0.6
2,747,796 + OHPLBJKB_02640 0.38 -0.0
2,747,797 - OHPLBJKB_02640 0.38 +0.6
2,747,797 - OHPLBJKB_02640 0.38 +0.6
2,747,797 - OHPLBJKB_02640 0.38 +0.4
2,747,797 - OHPLBJKB_02640 0.38 +0.9
2,747,828 - OHPLBJKB_02640 0.41 -1.4
2,747,899 + OHPLBJKB_02640 0.46 +0.6
2,747,952 - OHPLBJKB_02640 0.50 -0.6
2,747,993 + OHPLBJKB_02640 0.53 -0.6
2,748,111 - OHPLBJKB_02640 0.61 -0.3
2,748,136 + OHPLBJKB_02640 0.63 -0.1
2,748,156 - OHPLBJKB_02640 0.65 +0.4
2,748,240 + OHPLBJKB_02640 0.71 -0.1
2,748,241 - OHPLBJKB_02640 0.71 +0.6
2,748,404 + OHPLBJKB_02640 0.83 +0.1
2,748,404 + OHPLBJKB_02640 0.83 -0.4
2,748,405 - OHPLBJKB_02640 0.83 -2.3
2,748,413 + OHPLBJKB_02640 0.84 -0.1
2,748,515 + +0.4
2,748,515 + +0.8
2,748,515 + +0.2
2,748,516 - +0.5
2,748,516 - +0.4
2,748,558 + +0.4
2,748,558 + -0.2
2,748,559 - +0.6
2,748,607 + +0.8
2,748,607 + -1.6
2,748,607 + +0.1
2,748,608 - +0.7
2,748,661 - +0.3
2,748,661 - +0.7
2,748,661 - +0.4
2,748,661 - +0.3
2,749,451 + -0.1
2,749,451 + -0.1
2,749,451 + -0.4
2,749,451 + -0.4
2,749,458 - -0.2
2,749,495 + +0.7
2,749,522 + -1.0
2,749,523 - -0.4
2,749,567 + OHPLBJKB_02643 0.13 -0.1
2,749,591 + OHPLBJKB_02643 0.15 -0.1
2,749,592 - OHPLBJKB_02643 0.15 -1.4
2,749,592 - OHPLBJKB_02643 0.15 +2.2
2,749,595 + OHPLBJKB_02643 0.15 -0.2
2,749,596 - OHPLBJKB_02643 0.15 +0.0
2,749,596 - OHPLBJKB_02643 0.15 -0.1
2,749,596 - OHPLBJKB_02643 0.15 -0.2
2,749,596 - OHPLBJKB_02643 0.15 +0.7

Or see this region's nucleotide sequence