Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00343

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00341 and OHPLBJKB_00342 are separated by 31 nucleotidesOHPLBJKB_00342 and OHPLBJKB_00343 are separated by 85 nucleotidesOHPLBJKB_00343 and OHPLBJKB_00344 are separated by 66 nucleotides OHPLBJKB_00341: OHPLBJKB_00341 - putative adenosine monophosphate-protein transferase fic, at 375,095 to 375,697 _00341 OHPLBJKB_00342: OHPLBJKB_00342 - Aminodeoxychorismate synthase component 2, at 375,729 to 376,292 _00342 OHPLBJKB_00343: OHPLBJKB_00343 - Acetylornithine/succinyldiaminopimelate aminotransferase, at 376,378 to 377,598 _00343 OHPLBJKB_00344: OHPLBJKB_00344 - hypothetical protein, at 377,665 to 379,755 _00344 Position (kb) 376 377 378Strain fitness (log2 ratio) -2 -1 0 1 2 3at 375.473 kb on + strand, within OHPLBJKB_00341at 375.474 kb on - strand, within OHPLBJKB_00341at 375.476 kb on + strand, within OHPLBJKB_00341at 375.657 kb on + strandat 375.657 kb on + strandat 375.657 kb on + strandat 375.657 kb on + strandat 375.657 kb on + strandat 375.658 kb on - strandat 375.658 kb on - strandat 375.658 kb on - strandat 375.661 kb on + strandat 375.661 kb on + strandat 375.662 kb on - strandat 375.662 kb on - strandat 375.673 kb on - strandat 375.696 kb on - strandat 375.701 kb on - strandat 375.701 kb on - strandat 375.701 kb on - strandat 375.741 kb on - strandat 375.741 kb on - strandat 375.742 kb on + strandat 375.742 kb on + strandat 375.742 kb on + strandat 375.742 kb on + strandat 375.742 kb on + strandat 375.742 kb on + strandat 375.742 kb on + strandat 375.742 kb on + strandat 375.742 kb on + strandat 375.742 kb on + strandat 375.743 kb on - strandat 375.743 kb on - strandat 375.746 kb on + strandat 375.746 kb on + strandat 375.747 kb on - strandat 375.750 kb on + strandat 375.750 kb on + strandat 375.750 kb on + strandat 375.751 kb on - strandat 375.751 kb on - strandat 375.812 kb on + strand, within OHPLBJKB_00342at 376.001 kb on + strand, within OHPLBJKB_00342at 376.050 kb on - strand, within OHPLBJKB_00342at 376.050 kb on - strand, within OHPLBJKB_00342at 376.055 kb on + strand, within OHPLBJKB_00342at 376.056 kb on - strand, within OHPLBJKB_00342at 376.070 kb on - strand, within OHPLBJKB_00342at 376.070 kb on - strand, within OHPLBJKB_00342at 376.094 kb on + strand, within OHPLBJKB_00342at 376.138 kb on + strand, within OHPLBJKB_00342at 376.138 kb on + strand, within OHPLBJKB_00342at 376.355 kb on - strandat 376.401 kb on + strandat 376.401 kb on + strandat 376.402 kb on - strandat 376.439 kb on - strandat 376.456 kb on - strandat 376.507 kb on + strand, within OHPLBJKB_00343at 376.507 kb on + strand, within OHPLBJKB_00343at 376.507 kb on + strand, within OHPLBJKB_00343at 376.507 kb on + strand, within OHPLBJKB_00343at 376.508 kb on - strand, within OHPLBJKB_00343at 376.508 kb on - strand, within OHPLBJKB_00343at 376.508 kb on - strand, within OHPLBJKB_00343at 376.536 kb on + strand, within OHPLBJKB_00343at 376.536 kb on + strand, within OHPLBJKB_00343at 376.605 kb on + strand, within OHPLBJKB_00343at 376.605 kb on + strand, within OHPLBJKB_00343at 376.651 kb on - strand, within OHPLBJKB_00343at 376.758 kb on + strand, within OHPLBJKB_00343at 376.759 kb on - strand, within OHPLBJKB_00343at 376.792 kb on - strand, within OHPLBJKB_00343at 377.060 kb on + strand, within OHPLBJKB_00343at 377.060 kb on + strand, within OHPLBJKB_00343at 377.061 kb on - strand, within OHPLBJKB_00343at 377.061 kb on - strand, within OHPLBJKB_00343at 377.098 kb on + strand, within OHPLBJKB_00343at 377.098 kb on + strand, within OHPLBJKB_00343at 377.098 kb on + strand, within OHPLBJKB_00343at 377.099 kb on - strand, within OHPLBJKB_00343at 377.099 kb on - strand, within OHPLBJKB_00343at 377.099 kb on - strand, within OHPLBJKB_00343at 377.099 kb on - strand, within OHPLBJKB_00343at 377.099 kb on - strand, within OHPLBJKB_00343at 377.099 kb on - strand, within OHPLBJKB_00343at 377.099 kb on - strand, within OHPLBJKB_00343at 377.099 kb on - strand, within OHPLBJKB_00343at 377.108 kb on - strand, within OHPLBJKB_00343at 377.124 kb on + strand, within OHPLBJKB_00343at 377.230 kb on + strand, within OHPLBJKB_00343at 377.283 kb on + strand, within OHPLBJKB_00343at 377.284 kb on - strand, within OHPLBJKB_00343at 377.284 kb on - strand, within OHPLBJKB_00343at 377.284 kb on - strand, within OHPLBJKB_00343at 377.284 kb on - strand, within OHPLBJKB_00343at 377.362 kb on + strand, within OHPLBJKB_00343at 377.363 kb on - strand, within OHPLBJKB_00343at 377.399 kb on + strand, within OHPLBJKB_00343at 377.399 kb on + strand, within OHPLBJKB_00343at 377.400 kb on - strand, within OHPLBJKB_00343at 377.426 kb on - strand, within OHPLBJKB_00343at 377.474 kb on + strand, within OHPLBJKB_00343at 377.600 kb on + strandat 377.600 kb on + strandat 377.600 kb on + strandat 377.600 kb on + strandat 377.600 kb on + strandat 377.601 kb on - strandat 377.601 kb on - strandat 377.656 kb on + strandat 377.656 kb on + strandat 377.666 kb on + strandat 377.666 kb on + strandat 377.780 kb on - strandat 377.873 kb on + strandat 377.920 kb on + strand, within OHPLBJKB_00344at 377.920 kb on + strand, within OHPLBJKB_00344at 377.921 kb on - strand, within OHPLBJKB_00344at 377.921 kb on - strand, within OHPLBJKB_00344at 377.921 kb on - strand, within OHPLBJKB_00344at 377.985 kb on + strand, within OHPLBJKB_00344at 377.986 kb on - strand, within OHPLBJKB_00344at 377.988 kb on + strand, within OHPLBJKB_00344at 377.988 kb on + strand, within OHPLBJKB_00344at 377.988 kb on + strand, within OHPLBJKB_00344at 377.988 kb on + strand, within OHPLBJKB_00344at 377.989 kb on - strand, within OHPLBJKB_00344at 377.989 kb on - strand, within OHPLBJKB_00344at 377.989 kb on - strand, within OHPLBJKB_00344at 377.989 kb on - strand, within OHPLBJKB_00344at 377.989 kb on - strand, within OHPLBJKB_00344at 377.989 kb on - strand, within OHPLBJKB_00344at 377.989 kb on - strand, within OHPLBJKB_00344at 378.000 kb on + strand, within OHPLBJKB_00344at 378.001 kb on - strand, within OHPLBJKB_00344at 378.001 kb on - strand, within OHPLBJKB_00344at 378.031 kb on - strand, within OHPLBJKB_00344at 378.031 kb on - strand, within OHPLBJKB_00344at 378.042 kb on - strand, within OHPLBJKB_00344at 378.042 kb on - strand, within OHPLBJKB_00344at 378.087 kb on + strand, within OHPLBJKB_00344at 378.087 kb on + strand, within OHPLBJKB_00344at 378.088 kb on - strand, within OHPLBJKB_00344at 378.089 kb on + strand, within OHPLBJKB_00344at 378.089 kb on + strand, within OHPLBJKB_00344at 378.089 kb on + strand, within OHPLBJKB_00344at 378.089 kb on + strand, within OHPLBJKB_00344at 378.090 kb on - strand, within OHPLBJKB_00344at 378.090 kb on - strand, within OHPLBJKB_00344at 378.090 kb on - strand, within OHPLBJKB_00344at 378.090 kb on - strand, within OHPLBJKB_00344at 378.090 kb on - strand, within OHPLBJKB_00344at 378.099 kb on + strand, within OHPLBJKB_00344at 378.099 kb on + strand, within OHPLBJKB_00344at 378.099 kb on + strand, within OHPLBJKB_00344at 378.099 kb on + strand, within OHPLBJKB_00344at 378.100 kb on - strand, within OHPLBJKB_00344at 378.100 kb on - strand, within OHPLBJKB_00344at 378.100 kb on - strand, within OHPLBJKB_00344at 378.100 kb on - strand, within OHPLBJKB_00344at 378.100 kb on - strand, within OHPLBJKB_00344at 378.100 kb on - strand, within OHPLBJKB_00344at 378.141 kb on + strand, within OHPLBJKB_00344at 378.141 kb on + strand, within OHPLBJKB_00344at 378.142 kb on - strand, within OHPLBJKB_00344at 378.142 kb on - strand, within OHPLBJKB_00344at 378.193 kb on + strand, within OHPLBJKB_00344at 378.214 kb on - strand, within OHPLBJKB_00344at 378.271 kb on + strand, within OHPLBJKB_00344at 378.271 kb on + strand, within OHPLBJKB_00344at 378.272 kb on - strand, within OHPLBJKB_00344at 378.282 kb on + strand, within OHPLBJKB_00344at 378.294 kb on + strand, within OHPLBJKB_00344at 378.311 kb on + strand, within OHPLBJKB_00344at 378.311 kb on + strand, within OHPLBJKB_00344at 378.311 kb on + strand, within OHPLBJKB_00344at 378.311 kb on + strand, within OHPLBJKB_00344at 378.311 kb on + strand, within OHPLBJKB_00344at 378.311 kb on + strand, within OHPLBJKB_00344at 378.311 kb on + strand, within OHPLBJKB_00344at 378.311 kb on + strand, within OHPLBJKB_00344at 378.311 kb on + strand, within OHPLBJKB_00344at 378.312 kb on - strand, within OHPLBJKB_00344at 378.312 kb on - strand, within OHPLBJKB_00344at 378.312 kb on - strand, within OHPLBJKB_00344at 378.312 kb on - strand, within OHPLBJKB_00344at 378.312 kb on - strand, within OHPLBJKB_00344at 378.312 kb on - strand, within OHPLBJKB_00344at 378.312 kb on - strand, within OHPLBJKB_00344at 378.346 kb on - strand, within OHPLBJKB_00344at 378.347 kb on + strand, within OHPLBJKB_00344at 378.347 kb on + strand, within OHPLBJKB_00344at 378.347 kb on + strand, within OHPLBJKB_00344at 378.347 kb on + strand, within OHPLBJKB_00344at 378.347 kb on + strand, within OHPLBJKB_00344at 378.347 kb on + strand, within OHPLBJKB_00344at 378.347 kb on + strand, within OHPLBJKB_00344at 378.348 kb on - strand, within OHPLBJKB_00344at 378.348 kb on - strand, within OHPLBJKB_00344at 378.348 kb on - strand, within OHPLBJKB_00344at 378.348 kb on - strand, within OHPLBJKB_00344at 378.348 kb on - strand, within OHPLBJKB_00344at 378.348 kb on - strand, within OHPLBJKB_00344at 378.348 kb on - strand, within OHPLBJKB_00344at 378.348 kb on - strand, within OHPLBJKB_00344at 378.360 kb on + strand, within OHPLBJKB_00344at 378.363 kb on + strand, within OHPLBJKB_00344at 378.364 kb on - strand, within OHPLBJKB_00344at 378.364 kb on - strand, within OHPLBJKB_00344at 378.423 kb on + strand, within OHPLBJKB_00344at 378.423 kb on + strand, within OHPLBJKB_00344at 378.446 kb on + strand, within OHPLBJKB_00344at 378.447 kb on - strand, within OHPLBJKB_00344at 378.588 kb on - strand, within OHPLBJKB_00344

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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375,473 + OHPLBJKB_00341 0.63 -0.7
375,474 - OHPLBJKB_00341 0.63 -0.1
375,476 + OHPLBJKB_00341 0.63 -0.2
375,657 + +1.6
375,657 + -1.4
375,657 + -0.4
375,657 + -0.2
375,657 + -0.6
375,658 - +1.1
375,658 - +0.0
375,658 - +0.1
375,661 + +0.1
375,661 + +0.5
375,662 - +0.9
375,662 - -0.9
375,673 - +0.9
375,696 - -0.3
375,701 - -0.7
375,701 - +0.0
375,701 - +0.4
375,741 - +0.1
375,741 - +0.6
375,742 + +0.6
375,742 + -1.5
375,742 + +1.4
375,742 + -0.8
375,742 + -1.8
375,742 + -0.9
375,742 + +0.6
375,742 + -0.6
375,742 + +0.2
375,742 + -0.2
375,743 - -1.0
375,743 - -1.1
375,746 + +0.3
375,746 + -0.2
375,747 - -0.6
375,750 + -1.3
375,750 + -1.0
375,750 + +0.3
375,751 - -1.0
375,751 - +1.2
375,812 + OHPLBJKB_00342 0.15 +0.1
376,001 + OHPLBJKB_00342 0.48 +1.1
376,050 - OHPLBJKB_00342 0.57 -1.3
376,050 - OHPLBJKB_00342 0.57 +0.2
376,055 + OHPLBJKB_00342 0.58 +0.5
376,056 - OHPLBJKB_00342 0.58 -0.3
376,070 - OHPLBJKB_00342 0.60 +1.9
376,070 - OHPLBJKB_00342 0.60 -0.6
376,094 + OHPLBJKB_00342 0.65 -0.5
376,138 + OHPLBJKB_00342 0.73 +0.0
376,138 + OHPLBJKB_00342 0.73 -0.6
376,355 - -1.1
376,401 + -0.5
376,401 + -1.9
376,402 - +0.1
376,439 - -0.4
376,456 - +0.1
376,507 + OHPLBJKB_00343 0.11 +0.1
376,507 + OHPLBJKB_00343 0.11 -0.4
376,507 + OHPLBJKB_00343 0.11 +0.8
376,507 + OHPLBJKB_00343 0.11 +0.2
376,508 - OHPLBJKB_00343 0.11 -0.6
376,508 - OHPLBJKB_00343 0.11 -0.4
376,508 - OHPLBJKB_00343 0.11 +1.3
376,536 + OHPLBJKB_00343 0.13 -1.0
376,536 + OHPLBJKB_00343 0.13 -0.2
376,605 + OHPLBJKB_00343 0.19 -0.1
376,605 + OHPLBJKB_00343 0.19 -1.0
376,651 - OHPLBJKB_00343 0.22 +0.2
376,758 + OHPLBJKB_00343 0.31 +0.9
376,759 - OHPLBJKB_00343 0.31 -0.3
376,792 - OHPLBJKB_00343 0.34 +0.9
377,060 + OHPLBJKB_00343 0.56 -0.4
377,060 + OHPLBJKB_00343 0.56 -0.4
377,061 - OHPLBJKB_00343 0.56 +0.5
377,061 - OHPLBJKB_00343 0.56 +0.2
377,098 + OHPLBJKB_00343 0.59 -0.1
377,098 + OHPLBJKB_00343 0.59 -0.4
377,098 + OHPLBJKB_00343 0.59 -0.5
377,099 - OHPLBJKB_00343 0.59 +0.7
377,099 - OHPLBJKB_00343 0.59 -0.1
377,099 - OHPLBJKB_00343 0.59 -0.1
377,099 - OHPLBJKB_00343 0.59 +0.4
377,099 - OHPLBJKB_00343 0.59 -0.3
377,099 - OHPLBJKB_00343 0.59 -0.2
377,099 - OHPLBJKB_00343 0.59 -1.0
377,099 - OHPLBJKB_00343 0.59 +0.9
377,108 - OHPLBJKB_00343 0.60 +0.2
377,124 + OHPLBJKB_00343 0.61 +1.0
377,230 + OHPLBJKB_00343 0.70 -0.5
377,283 + OHPLBJKB_00343 0.74 +0.1
377,284 - OHPLBJKB_00343 0.74 +0.2
377,284 - OHPLBJKB_00343 0.74 -0.6
377,284 - OHPLBJKB_00343 0.74 +0.1
377,284 - OHPLBJKB_00343 0.74 +0.6
377,362 + OHPLBJKB_00343 0.81 +1.1
377,363 - OHPLBJKB_00343 0.81 +0.4
377,399 + OHPLBJKB_00343 0.84 +0.3
377,399 + OHPLBJKB_00343 0.84 +0.4
377,400 - OHPLBJKB_00343 0.84 +1.0
377,426 - OHPLBJKB_00343 0.86 -0.1
377,474 + OHPLBJKB_00343 0.90 +0.8
377,600 + +0.4
377,600 + -1.3
377,600 + +0.6
377,600 + +3.4
377,600 + +0.6
377,601 - +0.7
377,601 - +0.1
377,656 + -0.2
377,656 + -0.0
377,666 + -1.2
377,666 + -0.5
377,780 - +0.6
377,873 + -0.2
377,920 + OHPLBJKB_00344 0.12 -2.6
377,920 + OHPLBJKB_00344 0.12 -0.0
377,921 - OHPLBJKB_00344 0.12 +1.0
377,921 - OHPLBJKB_00344 0.12 +0.1
377,921 - OHPLBJKB_00344 0.12 -0.7
377,985 + OHPLBJKB_00344 0.15 +1.3
377,986 - OHPLBJKB_00344 0.15 +0.0
377,988 + OHPLBJKB_00344 0.15 -0.6
377,988 + OHPLBJKB_00344 0.15 +0.3
377,988 + OHPLBJKB_00344 0.15 +0.9
377,988 + OHPLBJKB_00344 0.15 -0.7
377,989 - OHPLBJKB_00344 0.15 +0.1
377,989 - OHPLBJKB_00344 0.15 +0.4
377,989 - OHPLBJKB_00344 0.15 +0.4
377,989 - OHPLBJKB_00344 0.15 -0.3
377,989 - OHPLBJKB_00344 0.15 +0.5
377,989 - OHPLBJKB_00344 0.15 +0.3
377,989 - OHPLBJKB_00344 0.15 -0.2
378,000 + OHPLBJKB_00344 0.16 +0.6
378,001 - OHPLBJKB_00344 0.16 +0.2
378,001 - OHPLBJKB_00344 0.16 +0.4
378,031 - OHPLBJKB_00344 0.18 -0.7
378,031 - OHPLBJKB_00344 0.18 +0.4
378,042 - OHPLBJKB_00344 0.18 -1.2
378,042 - OHPLBJKB_00344 0.18 -1.2
378,087 + OHPLBJKB_00344 0.20 +0.2
378,087 + OHPLBJKB_00344 0.20 -0.5
378,088 - OHPLBJKB_00344 0.20 -0.3
378,089 + OHPLBJKB_00344 0.20 +0.6
378,089 + OHPLBJKB_00344 0.20 +0.4
378,089 + OHPLBJKB_00344 0.20 -2.2
378,089 + OHPLBJKB_00344 0.20 -0.4
378,090 - OHPLBJKB_00344 0.20 +0.3
378,090 - OHPLBJKB_00344 0.20 -0.4
378,090 - OHPLBJKB_00344 0.20 -0.8
378,090 - OHPLBJKB_00344 0.20 +0.4
378,090 - OHPLBJKB_00344 0.20 +0.6
378,099 + OHPLBJKB_00344 0.21 -1.4
378,099 + OHPLBJKB_00344 0.21 -0.5
378,099 + OHPLBJKB_00344 0.21 -0.4
378,099 + OHPLBJKB_00344 0.21 -1.4
378,100 - OHPLBJKB_00344 0.21 +0.3
378,100 - OHPLBJKB_00344 0.21 +0.3
378,100 - OHPLBJKB_00344 0.21 -0.9
378,100 - OHPLBJKB_00344 0.21 -0.3
378,100 - OHPLBJKB_00344 0.21 -0.3
378,100 - OHPLBJKB_00344 0.21 -1.9
378,141 + OHPLBJKB_00344 0.23 -1.4
378,141 + OHPLBJKB_00344 0.23 -1.4
378,142 - OHPLBJKB_00344 0.23 +0.0
378,142 - OHPLBJKB_00344 0.23 +0.8
378,193 + OHPLBJKB_00344 0.25 +0.2
378,214 - OHPLBJKB_00344 0.26 -0.3
378,271 + OHPLBJKB_00344 0.29 +0.6
378,271 + OHPLBJKB_00344 0.29 -0.4
378,272 - OHPLBJKB_00344 0.29 -0.5
378,282 + OHPLBJKB_00344 0.30 -0.2
378,294 + OHPLBJKB_00344 0.30 -0.4
378,311 + OHPLBJKB_00344 0.31 -0.4
378,311 + OHPLBJKB_00344 0.31 -0.4
378,311 + OHPLBJKB_00344 0.31 +0.3
378,311 + OHPLBJKB_00344 0.31 +0.2
378,311 + OHPLBJKB_00344 0.31 -0.7
378,311 + OHPLBJKB_00344 0.31 +0.7
378,311 + OHPLBJKB_00344 0.31 -1.2
378,311 + OHPLBJKB_00344 0.31 -0.3
378,311 + OHPLBJKB_00344 0.31 +0.6
378,312 - OHPLBJKB_00344 0.31 -0.2
378,312 - OHPLBJKB_00344 0.31 +0.2
378,312 - OHPLBJKB_00344 0.31 +0.1
378,312 - OHPLBJKB_00344 0.31 +1.2
378,312 - OHPLBJKB_00344 0.31 +0.4
378,312 - OHPLBJKB_00344 0.31 +0.1
378,312 - OHPLBJKB_00344 0.31 +0.2
378,346 - OHPLBJKB_00344 0.33 +0.1
378,347 + OHPLBJKB_00344 0.33 +0.2
378,347 + OHPLBJKB_00344 0.33 -0.3
378,347 + OHPLBJKB_00344 0.33 -2.2
378,347 + OHPLBJKB_00344 0.33 -0.7
378,347 + OHPLBJKB_00344 0.33 -0.0
378,347 + OHPLBJKB_00344 0.33 -0.5
378,347 + OHPLBJKB_00344 0.33 -0.5
378,348 - OHPLBJKB_00344 0.33 -0.1
378,348 - OHPLBJKB_00344 0.33 +1.6
378,348 - OHPLBJKB_00344 0.33 -0.5
378,348 - OHPLBJKB_00344 0.33 +0.9
378,348 - OHPLBJKB_00344 0.33 -0.1
378,348 - OHPLBJKB_00344 0.33 +0.1
378,348 - OHPLBJKB_00344 0.33 +0.8
378,348 - OHPLBJKB_00344 0.33 -0.5
378,360 + OHPLBJKB_00344 0.33 -1.2
378,363 + OHPLBJKB_00344 0.33 -0.8
378,364 - OHPLBJKB_00344 0.33 +0.2
378,364 - OHPLBJKB_00344 0.33 -0.3
378,423 + OHPLBJKB_00344 0.36 -0.9
378,423 + OHPLBJKB_00344 0.36 +0.3
378,446 + OHPLBJKB_00344 0.37 -0.4
378,447 - OHPLBJKB_00344 0.37 +0.4
378,588 - OHPLBJKB_00344 0.44 -2.1

Or see this region's nucleotide sequence