Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00121

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00120 and OHPLBJKB_00121 are separated by 346 nucleotidesOHPLBJKB_00121 and OHPLBJKB_00122 overlap by 7 nucleotidesOHPLBJKB_00122 and OHPLBJKB_00123 overlap by 8 nucleotides OHPLBJKB_00120: OHPLBJKB_00120 - MltA-interacting protein, at 129,730 to 130,470 _00120 OHPLBJKB_00121: OHPLBJKB_00121 - L-ribulose-5-phosphate 4-epimerase SgbE, at 130,817 to 131,512 _00121 OHPLBJKB_00122: OHPLBJKB_00122 - L-ribulose-5-phosphate 3-epimerase UlaE, at 131,506 to 132,366 _00122 OHPLBJKB_00123: OHPLBJKB_00123 - 3-keto-L-gulonate-6-phosphate decarboxylase SgbH, at 132,359 to 133,021 _00123 Position (kb) 130 131 132Strain fitness (log2 ratio) -2 -1 0 1at 129.824 kb on - strand, within OHPLBJKB_00120at 129.879 kb on + strand, within OHPLBJKB_00120at 130.013 kb on - strand, within OHPLBJKB_00120at 130.033 kb on - strand, within OHPLBJKB_00120at 130.041 kb on + strand, within OHPLBJKB_00120at 130.041 kb on + strand, within OHPLBJKB_00120at 130.042 kb on - strand, within OHPLBJKB_00120at 130.044 kb on + strand, within OHPLBJKB_00120at 130.044 kb on + strand, within OHPLBJKB_00120at 130.045 kb on - strand, within OHPLBJKB_00120at 130.175 kb on + strand, within OHPLBJKB_00120at 130.176 kb on - strand, within OHPLBJKB_00120at 130.176 kb on - strand, within OHPLBJKB_00120at 130.176 kb on - strand, within OHPLBJKB_00120at 130.213 kb on + strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.214 kb on - strand, within OHPLBJKB_00120at 130.216 kb on + strand, within OHPLBJKB_00120at 130.216 kb on + strand, within OHPLBJKB_00120at 130.237 kb on + strand, within OHPLBJKB_00120at 130.237 kb on + strand, within OHPLBJKB_00120at 130.237 kb on + strand, within OHPLBJKB_00120at 130.238 kb on - strand, within OHPLBJKB_00120at 130.238 kb on - strand, within OHPLBJKB_00120at 130.240 kb on + strand, within OHPLBJKB_00120at 130.240 kb on + strand, within OHPLBJKB_00120at 130.240 kb on + strand, within OHPLBJKB_00120at 130.241 kb on - strand, within OHPLBJKB_00120at 130.241 kb on - strand, within OHPLBJKB_00120at 130.241 kb on - strand, within OHPLBJKB_00120at 130.243 kb on + strand, within OHPLBJKB_00120at 130.244 kb on - strand, within OHPLBJKB_00120at 130.315 kb on + strand, within OHPLBJKB_00120at 130.379 kb on - strand, within OHPLBJKB_00120at 130.438 kb on - strandat 130.468 kb on + strandat 130.468 kb on + strandat 130.579 kb on - strandat 130.579 kb on - strandat 130.611 kb on + strandat 130.611 kb on + strandat 130.611 kb on + strandat 130.612 kb on - strandat 130.679 kb on + strandat 130.679 kb on + strandat 130.725 kb on + strandat 130.726 kb on - strandat 130.726 kb on - strandat 130.773 kb on + strandat 130.773 kb on + strandat 130.819 kb on - strandat 130.849 kb on + strandat 130.857 kb on + strandat 130.858 kb on - strandat 130.927 kb on + strand, within OHPLBJKB_00121at 130.927 kb on + strand, within OHPLBJKB_00121at 130.928 kb on - strand, within OHPLBJKB_00121at 130.929 kb on + strand, within OHPLBJKB_00121at 130.929 kb on + strand, within OHPLBJKB_00121at 130.930 kb on - strand, within OHPLBJKB_00121at 130.930 kb on - strand, within OHPLBJKB_00121at 130.947 kb on - strand, within OHPLBJKB_00121at 130.957 kb on + strand, within OHPLBJKB_00121at 130.957 kb on + strand, within OHPLBJKB_00121at 131.086 kb on - strand, within OHPLBJKB_00121at 131.091 kb on + strand, within OHPLBJKB_00121at 131.370 kb on + strand, within OHPLBJKB_00121at 131.393 kb on + strand, within OHPLBJKB_00121at 131.508 kb on - strandat 131.512 kb on + strandat 131.513 kb on - strandat 131.514 kb on + strandat 131.514 kb on + strandat 131.514 kb on + strandat 131.514 kb on + strandat 131.624 kb on + strand, within OHPLBJKB_00122at 131.634 kb on + strand, within OHPLBJKB_00122at 131.904 kb on + strand, within OHPLBJKB_00122at 131.923 kb on + strand, within OHPLBJKB_00122at 131.923 kb on + strand, within OHPLBJKB_00122at 131.923 kb on + strand, within OHPLBJKB_00122at 131.923 kb on + strand, within OHPLBJKB_00122at 131.923 kb on + strand, within OHPLBJKB_00122at 131.924 kb on - strand, within OHPLBJKB_00122at 131.924 kb on - strand, within OHPLBJKB_00122at 131.924 kb on - strand, within OHPLBJKB_00122at 131.924 kb on - strand, within OHPLBJKB_00122at 132.006 kb on - strand, within OHPLBJKB_00122at 132.009 kb on - strand, within OHPLBJKB_00122at 132.009 kb on - strand, within OHPLBJKB_00122at 132.009 kb on - strand, within OHPLBJKB_00122at 132.009 kb on - strand, within OHPLBJKB_00122at 132.072 kb on + strand, within OHPLBJKB_00122at 132.073 kb on - strand, within OHPLBJKB_00122at 132.117 kb on + strand, within OHPLBJKB_00122at 132.382 kb on + strandat 132.458 kb on - strand, within OHPLBJKB_00123at 132.481 kb on + strand, within OHPLBJKB_00123

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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129,824 - OHPLBJKB_00120 0.13 +0.7
129,879 + OHPLBJKB_00120 0.20 +0.5
130,013 - OHPLBJKB_00120 0.38 +0.3
130,033 - OHPLBJKB_00120 0.41 +0.3
130,041 + OHPLBJKB_00120 0.42 -0.9
130,041 + OHPLBJKB_00120 0.42 -0.2
130,042 - OHPLBJKB_00120 0.42 -0.2
130,044 + OHPLBJKB_00120 0.42 +0.6
130,044 + OHPLBJKB_00120 0.42 -0.2
130,045 - OHPLBJKB_00120 0.43 -0.1
130,175 + OHPLBJKB_00120 0.60 -0.1
130,176 - OHPLBJKB_00120 0.60 -0.9
130,176 - OHPLBJKB_00120 0.60 -1.8
130,176 - OHPLBJKB_00120 0.60 +0.8
130,213 + OHPLBJKB_00120 0.65 -0.9
130,214 - OHPLBJKB_00120 0.65 +0.3
130,214 - OHPLBJKB_00120 0.65 +0.1
130,214 - OHPLBJKB_00120 0.65 -0.6
130,214 - OHPLBJKB_00120 0.65 +0.9
130,214 - OHPLBJKB_00120 0.65 +1.0
130,216 + OHPLBJKB_00120 0.66 -0.3
130,216 + OHPLBJKB_00120 0.66 +0.4
130,237 + OHPLBJKB_00120 0.68 +0.2
130,237 + OHPLBJKB_00120 0.68 +0.3
130,237 + OHPLBJKB_00120 0.68 +0.1
130,238 - OHPLBJKB_00120 0.69 -0.5
130,238 - OHPLBJKB_00120 0.69 -0.9
130,240 + OHPLBJKB_00120 0.69 +0.5
130,240 + OHPLBJKB_00120 0.69 -0.4
130,240 + OHPLBJKB_00120 0.69 +1.7
130,241 - OHPLBJKB_00120 0.69 -0.8
130,241 - OHPLBJKB_00120 0.69 +0.5
130,241 - OHPLBJKB_00120 0.69 -1.3
130,243 + OHPLBJKB_00120 0.69 +0.3
130,244 - OHPLBJKB_00120 0.69 -0.1
130,315 + OHPLBJKB_00120 0.79 +1.3
130,379 - OHPLBJKB_00120 0.88 -0.9
130,438 - +0.1
130,468 + +0.5
130,468 + +1.1
130,579 - +0.0
130,579 - -0.7
130,611 + -0.2
130,611 + -0.4
130,611 + +0.8
130,612 - +0.7
130,679 + -0.2
130,679 + -0.4
130,725 + +0.8
130,726 - -0.1
130,726 - +0.3
130,773 + -0.0
130,773 + -0.2
130,819 - +0.6
130,849 + +0.4
130,857 + -0.5
130,858 - -0.4
130,927 + OHPLBJKB_00121 0.16 -1.2
130,927 + OHPLBJKB_00121 0.16 +0.8
130,928 - OHPLBJKB_00121 0.16 -0.7
130,929 + OHPLBJKB_00121 0.16 +0.1
130,929 + OHPLBJKB_00121 0.16 +0.9
130,930 - OHPLBJKB_00121 0.16 -0.0
130,930 - OHPLBJKB_00121 0.16 -1.0
130,947 - OHPLBJKB_00121 0.19 +0.4
130,957 + OHPLBJKB_00121 0.20 +0.9
130,957 + OHPLBJKB_00121 0.20 +0.1
131,086 - OHPLBJKB_00121 0.39 -0.7
131,091 + OHPLBJKB_00121 0.39 -0.3
131,370 + OHPLBJKB_00121 0.79 -0.7
131,393 + OHPLBJKB_00121 0.83 +0.3
131,508 - +0.1
131,512 + -0.1
131,513 - +0.7
131,514 + -0.4
131,514 + -0.5
131,514 + +0.3
131,514 + -0.2
131,624 + OHPLBJKB_00122 0.14 -0.2
131,634 + OHPLBJKB_00122 0.15 -1.8
131,904 + OHPLBJKB_00122 0.46 -0.9
131,923 + OHPLBJKB_00122 0.48 -0.2
131,923 + OHPLBJKB_00122 0.48 +0.0
131,923 + OHPLBJKB_00122 0.48 -0.4
131,923 + OHPLBJKB_00122 0.48 +0.5
131,923 + OHPLBJKB_00122 0.48 -0.3
131,924 - OHPLBJKB_00122 0.49 +0.4
131,924 - OHPLBJKB_00122 0.49 +0.2
131,924 - OHPLBJKB_00122 0.49 +0.8
131,924 - OHPLBJKB_00122 0.49 -1.0
132,006 - OHPLBJKB_00122 0.58 -0.1
132,009 - OHPLBJKB_00122 0.58 +0.5
132,009 - OHPLBJKB_00122 0.58 -0.1
132,009 - OHPLBJKB_00122 0.58 -1.2
132,009 - OHPLBJKB_00122 0.58 -0.5
132,072 + OHPLBJKB_00122 0.66 -0.1
132,073 - OHPLBJKB_00122 0.66 +0.4
132,117 + OHPLBJKB_00122 0.71 +0.4
132,382 + -0.9
132,458 - OHPLBJKB_00123 0.15 +0.3
132,481 + OHPLBJKB_00123 0.18 +0.4

Or see this region's nucleotide sequence