Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04091

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04090 and OHPLBJKB_04091 are separated by 60 nucleotidesOHPLBJKB_04091 and OHPLBJKB_04092 are separated by 7 nucleotides OHPLBJKB_04090: OHPLBJKB_04090 - Argininosuccinate lyase, at 4,298,110 to 4,299,483 _04090 OHPLBJKB_04091: OHPLBJKB_04091 - Acetylglutamate kinase, at 4,299,544 to 4,300,320 _04091 OHPLBJKB_04092: OHPLBJKB_04092 - N-acetyl-gamma-glutamyl-phosphate reductase, at 4,300,328 to 4,301,332 _04092 Position (kb) 4299 4300 4301Strain fitness (log2 ratio) -2 -1 0 1at 4298.647 kb on + strand, within OHPLBJKB_04090at 4298.849 kb on - strand, within OHPLBJKB_04090at 4298.922 kb on + strand, within OHPLBJKB_04090at 4298.969 kb on + strand, within OHPLBJKB_04090at 4298.969 kb on + strand, within OHPLBJKB_04090at 4298.970 kb on - strand, within OHPLBJKB_04090at 4298.970 kb on - strand, within OHPLBJKB_04090at 4298.970 kb on - strand, within OHPLBJKB_04090at 4298.970 kb on - strand, within OHPLBJKB_04090at 4298.970 kb on - strand, within OHPLBJKB_04090at 4298.970 kb on - strand, within OHPLBJKB_04090at 4299.023 kb on + strand, within OHPLBJKB_04090at 4299.115 kb on - strand, within OHPLBJKB_04090at 4299.157 kb on - strand, within OHPLBJKB_04090at 4299.228 kb on + strand, within OHPLBJKB_04090at 4299.228 kb on + strand, within OHPLBJKB_04090at 4299.229 kb on - strand, within OHPLBJKB_04090at 4299.229 kb on - strand, within OHPLBJKB_04090at 4299.229 kb on - strand, within OHPLBJKB_04090at 4299.229 kb on - strand, within OHPLBJKB_04090at 4299.235 kb on - strand, within OHPLBJKB_04090at 4299.483 kb on + strandat 4299.497 kb on + strandat 4299.545 kb on + strandat 4299.546 kb on - strandat 4299.579 kb on + strandat 4299.622 kb on - strand, within OHPLBJKB_04091at 4299.622 kb on - strand, within OHPLBJKB_04091at 4299.625 kb on + strand, within OHPLBJKB_04091at 4299.691 kb on - strand, within OHPLBJKB_04091at 4299.693 kb on + strand, within OHPLBJKB_04091at 4299.693 kb on + strand, within OHPLBJKB_04091at 4299.925 kb on - strand, within OHPLBJKB_04091at 4299.925 kb on - strand, within OHPLBJKB_04091at 4299.931 kb on - strand, within OHPLBJKB_04091at 4299.964 kb on + strand, within OHPLBJKB_04091at 4300.022 kb on - strand, within OHPLBJKB_04091at 4300.095 kb on + strand, within OHPLBJKB_04091at 4300.102 kb on + strand, within OHPLBJKB_04091at 4300.103 kb on - strand, within OHPLBJKB_04091at 4300.232 kb on + strand, within OHPLBJKB_04091at 4300.302 kb on + strandat 4300.306 kb on + strandat 4300.307 kb on - strandat 4300.307 kb on - strandat 4300.307 kb on - strandat 4300.329 kb on + strandat 4300.329 kb on + strandat 4300.329 kb on + strandat 4300.330 kb on - strandat 4300.330 kb on - strandat 4300.330 kb on - strandat 4300.330 kb on - strandat 4300.333 kb on + strandat 4300.333 kb on + strandat 4300.334 kb on - strandat 4300.334 kb on - strandat 4300.407 kb on - strandat 4300.515 kb on + strand, within OHPLBJKB_04092at 4300.542 kb on + strand, within OHPLBJKB_04092at 4300.553 kb on + strand, within OHPLBJKB_04092at 4300.554 kb on - strand, within OHPLBJKB_04092at 4300.554 kb on - strand, within OHPLBJKB_04092at 4300.603 kb on + strand, within OHPLBJKB_04092at 4300.703 kb on - strand, within OHPLBJKB_04092at 4300.726 kb on + strand, within OHPLBJKB_04092at 4300.904 kb on + strand, within OHPLBJKB_04092at 4300.909 kb on + strand, within OHPLBJKB_04092at 4300.909 kb on + strand, within OHPLBJKB_04092at 4300.984 kb on - strand, within OHPLBJKB_04092at 4300.984 kb on - strand, within OHPLBJKB_04092at 4300.993 kb on - strand, within OHPLBJKB_04092at 4300.993 kb on - strand, within OHPLBJKB_04092at 4301.108 kb on + strand, within OHPLBJKB_04092at 4301.108 kb on + strand, within OHPLBJKB_04092at 4301.108 kb on + strand, within OHPLBJKB_04092at 4301.254 kb on + strandat 4301.270 kb on + strandat 4301.270 kb on + strandat 4301.271 kb on - strandat 4301.274 kb on + strandat 4301.274 kb on + strandat 4301.274 kb on + strandat 4301.274 kb on + strandat 4301.275 kb on - strandat 4301.275 kb on - strandat 4301.275 kb on - strandat 4301.275 kb on - strandat 4301.275 kb on - strandat 4301.275 kb on - strandat 4301.275 kb on - strandat 4301.275 kb on - strandat 4301.275 kb on - strandat 4301.282 kb on + strandat 4301.282 kb on + strandat 4301.283 kb on - strandat 4301.283 kb on - strandat 4301.283 kb on - strandat 4301.283 kb on - strandat 4301.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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4,298,647 + OHPLBJKB_04090 0.39 -0.6
4,298,849 - OHPLBJKB_04090 0.54 +0.1
4,298,922 + OHPLBJKB_04090 0.59 +0.6
4,298,969 + OHPLBJKB_04090 0.63 +0.8
4,298,969 + OHPLBJKB_04090 0.63 -1.2
4,298,970 - OHPLBJKB_04090 0.63 +0.9
4,298,970 - OHPLBJKB_04090 0.63 -0.1
4,298,970 - OHPLBJKB_04090 0.63 +0.3
4,298,970 - OHPLBJKB_04090 0.63 +0.1
4,298,970 - OHPLBJKB_04090 0.63 -1.4
4,298,970 - OHPLBJKB_04090 0.63 +0.6
4,299,023 + OHPLBJKB_04090 0.66 -2.3
4,299,115 - OHPLBJKB_04090 0.73 -1.4
4,299,157 - OHPLBJKB_04090 0.76 +0.8
4,299,228 + OHPLBJKB_04090 0.81 -1.2
4,299,228 + OHPLBJKB_04090 0.81 +0.3
4,299,229 - OHPLBJKB_04090 0.81 +0.0
4,299,229 - OHPLBJKB_04090 0.81 -1.2
4,299,229 - OHPLBJKB_04090 0.81 +0.7
4,299,229 - OHPLBJKB_04090 0.81 -0.4
4,299,235 - OHPLBJKB_04090 0.82 +1.6
4,299,483 + -0.8
4,299,497 + -1.3
4,299,545 + -0.4
4,299,546 - -0.3
4,299,579 + -0.3
4,299,622 - OHPLBJKB_04091 0.10 -0.4
4,299,622 - OHPLBJKB_04091 0.10 -0.3
4,299,625 + OHPLBJKB_04091 0.10 -0.1
4,299,691 - OHPLBJKB_04091 0.19 +0.3
4,299,693 + OHPLBJKB_04091 0.19 +0.8
4,299,693 + OHPLBJKB_04091 0.19 +0.5
4,299,925 - OHPLBJKB_04091 0.49 -1.4
4,299,925 - OHPLBJKB_04091 0.49 -0.1
4,299,931 - OHPLBJKB_04091 0.50 -0.7
4,299,964 + OHPLBJKB_04091 0.54 -0.4
4,300,022 - OHPLBJKB_04091 0.62 -0.3
4,300,095 + OHPLBJKB_04091 0.71 +0.5
4,300,102 + OHPLBJKB_04091 0.72 +0.4
4,300,103 - OHPLBJKB_04091 0.72 -0.6
4,300,232 + OHPLBJKB_04091 0.89 -0.7
4,300,302 + -1.1
4,300,306 + +0.3
4,300,307 - +1.0
4,300,307 - +0.2
4,300,307 - +0.4
4,300,329 + -0.1
4,300,329 + -2.1
4,300,329 + +0.5
4,300,330 - +1.5
4,300,330 - -0.3
4,300,330 - -0.1
4,300,330 - -0.6
4,300,333 + -0.2
4,300,333 + -0.7
4,300,334 - -0.4
4,300,334 - -0.8
4,300,407 - +0.1
4,300,515 + OHPLBJKB_04092 0.19 -0.1
4,300,542 + OHPLBJKB_04092 0.21 +0.1
4,300,553 + OHPLBJKB_04092 0.22 -0.4
4,300,554 - OHPLBJKB_04092 0.22 -0.7
4,300,554 - OHPLBJKB_04092 0.22 -1.2
4,300,603 + OHPLBJKB_04092 0.27 +1.3
4,300,703 - OHPLBJKB_04092 0.37 +0.3
4,300,726 + OHPLBJKB_04092 0.40 +0.9
4,300,904 + OHPLBJKB_04092 0.57 -0.9
4,300,909 + OHPLBJKB_04092 0.58 -1.9
4,300,909 + OHPLBJKB_04092 0.58 -0.0
4,300,984 - OHPLBJKB_04092 0.65 +0.2
4,300,984 - OHPLBJKB_04092 0.65 -1.2
4,300,993 - OHPLBJKB_04092 0.66 -0.4
4,300,993 - OHPLBJKB_04092 0.66 +0.9
4,301,108 + OHPLBJKB_04092 0.78 +0.1
4,301,108 + OHPLBJKB_04092 0.78 -2.4
4,301,108 + OHPLBJKB_04092 0.78 -0.5
4,301,254 + -0.3
4,301,270 + -0.5
4,301,270 + -1.0
4,301,271 - -0.2
4,301,274 + +0.1
4,301,274 + +0.4
4,301,274 + -0.8
4,301,274 + -1.2
4,301,275 - -0.0
4,301,275 - -0.7
4,301,275 - +0.5
4,301,275 - +0.5
4,301,275 - +1.4
4,301,275 - -0.2
4,301,275 - +0.2
4,301,275 - -0.2
4,301,275 - +0.4
4,301,282 + +0.0
4,301,282 + +0.9
4,301,283 - +0.3
4,301,283 - -0.2
4,301,283 - -0.2
4,301,283 - -1.4
4,301,299 - -0.3

Or see this region's nucleotide sequence