Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02039

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02037 and OHPLBJKB_02038 overlap by 4 nucleotidesOHPLBJKB_02038 and OHPLBJKB_02039 are separated by 99 nucleotidesOHPLBJKB_02039 and OHPLBJKB_02040 are separated by 547 nucleotidesOHPLBJKB_02040 and OHPLBJKB_02041 are separated by 8 nucleotides OHPLBJKB_02037: OHPLBJKB_02037 - hypothetical protein, at 2,111,935 to 2,114,991 _02037 OHPLBJKB_02038: OHPLBJKB_02038 - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 2,114,988 to 2,115,398 _02038 OHPLBJKB_02039: OHPLBJKB_02039 - hypothetical protein, at 2,115,498 to 2,115,686 _02039 OHPLBJKB_02040: OHPLBJKB_02040 - Protein SufA, at 2,116,234 to 2,116,602 _02040 OHPLBJKB_02041: OHPLBJKB_02041 - FeS cluster assembly protein SufB, at 2,116,611 to 2,118,098 _02041 Position (kb) 2115 2116Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2114.541 kb on - strand, within OHPLBJKB_02037at 2114.541 kb on - strand, within OHPLBJKB_02037at 2114.560 kb on + strand, within OHPLBJKB_02037at 2114.560 kb on + strand, within OHPLBJKB_02037at 2114.561 kb on - strand, within OHPLBJKB_02037at 2114.561 kb on - strand, within OHPLBJKB_02037at 2114.562 kb on + strand, within OHPLBJKB_02037at 2114.562 kb on + strand, within OHPLBJKB_02037at 2114.563 kb on - strand, within OHPLBJKB_02037at 2114.595 kb on + strand, within OHPLBJKB_02037at 2114.804 kb on - strandat 2114.845 kb on + strandat 2114.852 kb on + strandat 2114.853 kb on - strandat 2114.868 kb on + strandat 2114.983 kb on - strandat 2114.985 kb on + strandat 2114.986 kb on - strandat 2114.986 kb on - strandat 2115.029 kb on + strand, within OHPLBJKB_02038at 2115.077 kb on + strand, within OHPLBJKB_02038at 2115.077 kb on + strand, within OHPLBJKB_02038at 2115.202 kb on + strand, within OHPLBJKB_02038at 2115.202 kb on + strand, within OHPLBJKB_02038at 2115.202 kb on + strand, within OHPLBJKB_02038at 2115.202 kb on + strand, within OHPLBJKB_02038at 2115.203 kb on - strand, within OHPLBJKB_02038at 2115.203 kb on - strand, within OHPLBJKB_02038at 2115.203 kb on - strand, within OHPLBJKB_02038at 2115.203 kb on - strand, within OHPLBJKB_02038at 2115.203 kb on - strand, within OHPLBJKB_02038at 2115.203 kb on - strand, within OHPLBJKB_02038at 2115.203 kb on - strand, within OHPLBJKB_02038at 2115.203 kb on - strand, within OHPLBJKB_02038at 2115.203 kb on - strand, within OHPLBJKB_02038at 2115.425 kb on + strandat 2115.462 kb on + strandat 2115.462 kb on + strandat 2115.465 kb on - strandat 2115.465 kb on - strandat 2115.465 kb on - strandat 2115.483 kb on - strandat 2115.497 kb on + strandat 2115.497 kb on + strandat 2115.497 kb on + strandat 2115.497 kb on + strandat 2115.497 kb on + strandat 2115.497 kb on + strandat 2115.497 kb on + strandat 2115.497 kb on + strandat 2115.498 kb on - strandat 2115.498 kb on - strandat 2115.498 kb on - strandat 2115.498 kb on - strandat 2115.498 kb on - strandat 2115.599 kb on - strand, within OHPLBJKB_02039at 2115.599 kb on - strand, within OHPLBJKB_02039at 2115.599 kb on - strand, within OHPLBJKB_02039at 2115.623 kb on + strand, within OHPLBJKB_02039at 2115.623 kb on + strand, within OHPLBJKB_02039at 2115.623 kb on + strand, within OHPLBJKB_02039at 2115.643 kb on + strand, within OHPLBJKB_02039at 2115.643 kb on + strand, within OHPLBJKB_02039at 2115.644 kb on - strand, within OHPLBJKB_02039at 2115.696 kb on - strandat 2115.759 kb on + strandat 2115.767 kb on - strandat 2115.799 kb on + strandat 2115.843 kb on - strandat 2115.867 kb on - strandat 2115.867 kb on - strandat 2115.906 kb on - strandat 2115.915 kb on + strandat 2115.975 kb on + strandat 2115.975 kb on + strandat 2115.975 kb on + strandat 2116.066 kb on + strandat 2116.066 kb on + strandat 2116.108 kb on + strandat 2116.108 kb on + strandat 2116.109 kb on - strandat 2116.118 kb on - strandat 2116.118 kb on - strandat 2116.118 kb on - strandat 2116.118 kb on - strandat 2116.201 kb on + strandat 2116.201 kb on + strandat 2116.201 kb on + strandat 2116.202 kb on - strandat 2116.203 kb on + strandat 2116.203 kb on + strandat 2116.203 kb on + strandat 2116.203 kb on + strandat 2116.204 kb on - strandat 2116.287 kb on - strand, within OHPLBJKB_02040at 2116.311 kb on - strand, within OHPLBJKB_02040at 2116.345 kb on - strand, within OHPLBJKB_02040at 2116.345 kb on - strand, within OHPLBJKB_02040at 2116.530 kb on + strand, within OHPLBJKB_02040at 2116.557 kb on + strand, within OHPLBJKB_02040at 2116.558 kb on - strand, within OHPLBJKB_02040at 2116.600 kb on + strandat 2116.600 kb on + strandat 2116.601 kb on - strandat 2116.610 kb on + strandat 2116.610 kb on + strandat 2116.610 kb on + strandat 2116.610 kb on + strandat 2116.610 kb on + strandat 2116.610 kb on + strandat 2116.611 kb on - strandat 2116.611 kb on - strandat 2116.611 kb on - strandat 2116.622 kb on + strandat 2116.671 kb on + strandat 2116.671 kb on + strandat 2116.672 kb on - strandat 2116.673 kb on + strandat 2116.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,114,541 - OHPLBJKB_02037 0.85 +0.1
2,114,541 - OHPLBJKB_02037 0.85 +0.3
2,114,560 + OHPLBJKB_02037 0.86 +1.0
2,114,560 + OHPLBJKB_02037 0.86 -0.5
2,114,561 - OHPLBJKB_02037 0.86 -1.7
2,114,561 - OHPLBJKB_02037 0.86 -0.3
2,114,562 + OHPLBJKB_02037 0.86 +0.4
2,114,562 + OHPLBJKB_02037 0.86 -0.1
2,114,563 - OHPLBJKB_02037 0.86 +1.7
2,114,595 + OHPLBJKB_02037 0.87 -0.6
2,114,804 - +0.2
2,114,845 + -1.1
2,114,852 + -0.9
2,114,853 - +0.6
2,114,868 + -1.0
2,114,983 - -0.8
2,114,985 + -0.2
2,114,986 - +1.3
2,114,986 - -1.6
2,115,029 + OHPLBJKB_02038 0.10 -0.3
2,115,077 + OHPLBJKB_02038 0.22 +1.6
2,115,077 + OHPLBJKB_02038 0.22 +1.5
2,115,202 + OHPLBJKB_02038 0.52 -3.0
2,115,202 + OHPLBJKB_02038 0.52 -0.7
2,115,202 + OHPLBJKB_02038 0.52 -0.3
2,115,202 + OHPLBJKB_02038 0.52 -1.1
2,115,203 - OHPLBJKB_02038 0.52 -0.3
2,115,203 - OHPLBJKB_02038 0.52 -0.1
2,115,203 - OHPLBJKB_02038 0.52 +0.1
2,115,203 - OHPLBJKB_02038 0.52 +1.0
2,115,203 - OHPLBJKB_02038 0.52 +1.3
2,115,203 - OHPLBJKB_02038 0.52 +0.4
2,115,203 - OHPLBJKB_02038 0.52 -0.2
2,115,203 - OHPLBJKB_02038 0.52 +0.9
2,115,203 - OHPLBJKB_02038 0.52 -1.6
2,115,425 + +0.6
2,115,462 + +0.9
2,115,462 + +0.2
2,115,465 - +1.0
2,115,465 - +1.4
2,115,465 - +0.2
2,115,483 - +1.6
2,115,497 + +1.8
2,115,497 + -0.3
2,115,497 + -1.7
2,115,497 + -1.5
2,115,497 + -1.2
2,115,497 + -0.4
2,115,497 + -0.7
2,115,497 + -0.8
2,115,498 - -0.8
2,115,498 - -0.6
2,115,498 - -1.0
2,115,498 - -1.0
2,115,498 - -1.1
2,115,599 - OHPLBJKB_02039 0.53 +0.7
2,115,599 - OHPLBJKB_02039 0.53 +0.5
2,115,599 - OHPLBJKB_02039 0.53 -0.1
2,115,623 + OHPLBJKB_02039 0.66 -0.8
2,115,623 + OHPLBJKB_02039 0.66 -1.1
2,115,623 + OHPLBJKB_02039 0.66 +0.1
2,115,643 + OHPLBJKB_02039 0.77 -0.2
2,115,643 + OHPLBJKB_02039 0.77 -1.3
2,115,644 - OHPLBJKB_02039 0.77 +0.7
2,115,696 - +1.6
2,115,759 + +0.1
2,115,767 - +0.4
2,115,799 + -0.1
2,115,843 - -0.5
2,115,867 - -0.2
2,115,867 - +0.5
2,115,906 - -1.4
2,115,915 + -0.0
2,115,975 + +0.3
2,115,975 + +0.0
2,115,975 + +0.7
2,116,066 + -0.6
2,116,066 + +0.6
2,116,108 + -0.9
2,116,108 + -0.2
2,116,109 - +0.6
2,116,118 - +0.0
2,116,118 - +0.2
2,116,118 - +1.0
2,116,118 - -0.8
2,116,201 + -0.2
2,116,201 + +0.4
2,116,201 + +0.8
2,116,202 - +0.8
2,116,203 + +1.5
2,116,203 + +0.4
2,116,203 + +0.3
2,116,203 + +1.2
2,116,204 - +0.5
2,116,287 - OHPLBJKB_02040 0.14 +2.0
2,116,311 - OHPLBJKB_02040 0.21 +0.9
2,116,345 - OHPLBJKB_02040 0.30 -0.4
2,116,345 - OHPLBJKB_02040 0.30 +0.4
2,116,530 + OHPLBJKB_02040 0.80 +2.4
2,116,557 + OHPLBJKB_02040 0.88 +0.2
2,116,558 - OHPLBJKB_02040 0.88 -1.1
2,116,600 + +0.7
2,116,600 + -0.3
2,116,601 - +0.1
2,116,610 + -0.1
2,116,610 + -1.2
2,116,610 + +0.4
2,116,610 + -0.8
2,116,610 + +0.3
2,116,610 + +0.3
2,116,611 - +0.6
2,116,611 - +1.0
2,116,611 - -0.0
2,116,622 + +0.7
2,116,671 + -0.6
2,116,671 + +0.2
2,116,672 - -0.5
2,116,673 + +1.1
2,116,674 - +0.9

Or see this region's nucleotide sequence