Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01436 and OHPLBJKB_01437 are separated by 531 nucleotides OHPLBJKB_01437 and OHPLBJKB_01438 are separated by 195 nucleotides OHPLBJKB_01438 and OHPLBJKB_01439 are separated by 155 nucleotides OHPLBJKB_01439 and OHPLBJKB_01440 overlap by 66 nucleotides OHPLBJKB_01440 and OHPLBJKB_01441 are separated by 6 nucleotides
OHPLBJKB_01436: OHPLBJKB_01436 - hypothetical protein, at 1,483,333 to 1,485,060
_01436
OHPLBJKB_01437: OHPLBJKB_01437 - Protease ElaD, at 1,485,592 to 1,485,969
_01437
OHPLBJKB_01438: OHPLBJKB_01438 - IS1 family transposase IS1A, at 1,486,165 to 1,486,440
_01438
OHPLBJKB_01439: OHPLBJKB_01439 - IS1 family transposase IS1S, at 1,486,596 to 1,486,862
_01439
OHPLBJKB_01440: OHPLBJKB_01440 - hypothetical protein, at 1,486,797 to 1,486,955
_01440
OHPLBJKB_01441: OHPLBJKB_01441 - hypothetical protein, at 1,486,962 to 1,487,123
_01441
Position (kb)
1485
1486 Strain fitness (log2 ratio)
-1
0
1 at 1484.651 kb on + strand, within OHPLBJKB_01436 at 1484.651 kb on + strand, within OHPLBJKB_01436 at 1484.667 kb on + strand, within OHPLBJKB_01436 at 1484.667 kb on + strand, within OHPLBJKB_01436 at 1484.670 kb on - strand, within OHPLBJKB_01436 at 1484.670 kb on - strand, within OHPLBJKB_01436 at 1484.871 kb on + strand, within OHPLBJKB_01436 at 1484.891 kb on + strand at 1484.892 kb on - strand at 1484.938 kb on - strand at 1484.938 kb on - strand at 1484.938 kb on - strand at 1485.077 kb on + strand at 1485.077 kb on + strand at 1485.078 kb on - strand at 1485.078 kb on - strand at 1485.640 kb on + strand, within OHPLBJKB_01437 at 1485.771 kb on + strand, within OHPLBJKB_01437 at 1485.776 kb on + strand, within OHPLBJKB_01437 at 1486.140 kb on - strand at 1486.912 kb on - strand, within OHPLBJKB_01440
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 1,484,651 + OHPLBJKB_01436 0.76 -0.5 1,484,651 + OHPLBJKB_01436 0.76 +0.6 1,484,667 + OHPLBJKB_01436 0.77 -0.8 1,484,667 + OHPLBJKB_01436 0.77 -0.3 1,484,670 - OHPLBJKB_01436 0.77 +0.3 1,484,670 - OHPLBJKB_01436 0.77 -1.0 1,484,871 + OHPLBJKB_01436 0.89 -1.5 1,484,891 + +0.4 1,484,892 - +0.2 1,484,938 - +0.4 1,484,938 - +0.1 1,484,938 - +1.1 1,485,077 + +0.4 1,485,077 + -0.1 1,485,078 - -0.5 1,485,078 - -1.6 1,485,640 + OHPLBJKB_01437 0.13 +0.7 1,485,771 + OHPLBJKB_01437 0.47 +0.9 1,485,776 + OHPLBJKB_01437 0.49 +0.8 1,486,140 - -0.3 1,486,912 - OHPLBJKB_01440 0.72 +0.7
Or see this region's nucleotide sequence