Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_03966

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_03964 and OHPLBJKB_03965 overlap by 4 nucleotidesOHPLBJKB_03965 and OHPLBJKB_03966 overlap by 8 nucleotidesOHPLBJKB_03966 and OHPLBJKB_03967 are separated by 115 nucleotides OHPLBJKB_03964: OHPLBJKB_03964 - Formate-dependent nitrite reductase complex subunit NrfG, at 4,160,095 to 4,160,691 _03964 OHPLBJKB_03965: OHPLBJKB_03965 - Cytochrome c-type biogenesis protein CcmH, at 4,160,688 to 4,161,071 _03965 OHPLBJKB_03966: OHPLBJKB_03966 - Cytochrome c-type biogenesis protein CcmF, at 4,161,064 to 4,162,686 _03966 OHPLBJKB_03967: OHPLBJKB_03967 - hypothetical protein, at 4,162,802 to 4,163,758 _03967 Position (kb) 4161 4162 4163Strain fitness (log2 ratio) -2 -1 0 1 2at 4160.075 kb on + strandat 4160.076 kb on - strandat 4160.076 kb on - strandat 4160.076 kb on - strandat 4160.127 kb on + strandat 4160.130 kb on + strandat 4160.131 kb on - strandat 4160.226 kb on + strand, within OHPLBJKB_03964at 4160.319 kb on + strand, within OHPLBJKB_03964at 4160.319 kb on + strand, within OHPLBJKB_03964at 4160.319 kb on + strand, within OHPLBJKB_03964at 4160.320 kb on - strand, within OHPLBJKB_03964at 4160.320 kb on - strand, within OHPLBJKB_03964at 4160.320 kb on - strand, within OHPLBJKB_03964at 4160.320 kb on - strand, within OHPLBJKB_03964at 4160.364 kb on - strand, within OHPLBJKB_03964at 4160.386 kb on + strand, within OHPLBJKB_03964at 4160.386 kb on + strand, within OHPLBJKB_03964at 4160.386 kb on + strand, within OHPLBJKB_03964at 4160.387 kb on - strand, within OHPLBJKB_03964at 4160.387 kb on - strand, within OHPLBJKB_03964at 4160.387 kb on - strand, within OHPLBJKB_03964at 4160.387 kb on - strand, within OHPLBJKB_03964at 4160.387 kb on - strand, within OHPLBJKB_03964at 4160.387 kb on - strand, within OHPLBJKB_03964at 4160.387 kb on - strand, within OHPLBJKB_03964at 4160.387 kb on - strand, within OHPLBJKB_03964at 4160.444 kb on + strand, within OHPLBJKB_03964at 4160.444 kb on + strand, within OHPLBJKB_03964at 4160.444 kb on + strand, within OHPLBJKB_03964at 4160.444 kb on + strand, within OHPLBJKB_03964at 4160.445 kb on - strand, within OHPLBJKB_03964at 4160.445 kb on - strand, within OHPLBJKB_03964at 4160.445 kb on - strand, within OHPLBJKB_03964at 4160.445 kb on - strand, within OHPLBJKB_03964at 4160.445 kb on - strand, within OHPLBJKB_03964at 4160.448 kb on - strand, within OHPLBJKB_03964at 4160.554 kb on + strand, within OHPLBJKB_03964at 4160.577 kb on - strand, within OHPLBJKB_03964at 4160.608 kb on + strand, within OHPLBJKB_03964at 4160.609 kb on - strand, within OHPLBJKB_03964at 4160.733 kb on + strand, within OHPLBJKB_03965at 4160.792 kb on - strand, within OHPLBJKB_03965at 4160.810 kb on - strand, within OHPLBJKB_03965at 4160.946 kb on + strand, within OHPLBJKB_03965at 4160.946 kb on + strand, within OHPLBJKB_03965at 4160.947 kb on - strand, within OHPLBJKB_03965at 4160.960 kb on + strand, within OHPLBJKB_03965at 4160.960 kb on + strand, within OHPLBJKB_03965at 4161.010 kb on - strand, within OHPLBJKB_03965at 4161.010 kb on - strand, within OHPLBJKB_03965at 4161.010 kb on - strand, within OHPLBJKB_03965at 4161.036 kb on - strandat 4161.036 kb on - strandat 4161.039 kb on + strandat 4161.040 kb on - strandat 4161.066 kb on - strandat 4161.157 kb on + strandat 4161.158 kb on - strandat 4161.158 kb on - strandat 4161.158 kb on - strandat 4161.161 kb on + strandat 4161.161 kb on + strandat 4161.161 kb on + strandat 4161.161 kb on + strandat 4161.161 kb on + strandat 4161.161 kb on + strandat 4161.161 kb on + strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.162 kb on - strandat 4161.212 kb on + strandat 4161.353 kb on + strand, within OHPLBJKB_03966at 4161.353 kb on + strand, within OHPLBJKB_03966at 4161.354 kb on - strand, within OHPLBJKB_03966at 4161.354 kb on - strand, within OHPLBJKB_03966at 4161.354 kb on - strand, within OHPLBJKB_03966at 4161.398 kb on + strand, within OHPLBJKB_03966at 4161.398 kb on + strand, within OHPLBJKB_03966at 4161.399 kb on - strand, within OHPLBJKB_03966at 4161.508 kb on + strand, within OHPLBJKB_03966at 4161.508 kb on + strand, within OHPLBJKB_03966at 4161.508 kb on + strand, within OHPLBJKB_03966at 4161.609 kb on - strand, within OHPLBJKB_03966at 4161.663 kb on - strand, within OHPLBJKB_03966at 4161.714 kb on + strand, within OHPLBJKB_03966at 4161.725 kb on - strand, within OHPLBJKB_03966at 4161.901 kb on + strand, within OHPLBJKB_03966at 4161.901 kb on + strand, within OHPLBJKB_03966at 4161.901 kb on + strand, within OHPLBJKB_03966at 4161.901 kb on + strand, within OHPLBJKB_03966at 4161.901 kb on + strand, within OHPLBJKB_03966at 4161.901 kb on + strand, within OHPLBJKB_03966at 4161.901 kb on + strand, within OHPLBJKB_03966at 4161.901 kb on + strand, within OHPLBJKB_03966at 4161.901 kb on + strand, within OHPLBJKB_03966at 4161.901 kb on + strand, within OHPLBJKB_03966at 4161.902 kb on - strand, within OHPLBJKB_03966at 4161.902 kb on - strand, within OHPLBJKB_03966at 4161.902 kb on - strand, within OHPLBJKB_03966at 4161.902 kb on - strand, within OHPLBJKB_03966at 4161.902 kb on - strand, within OHPLBJKB_03966at 4161.931 kb on + strand, within OHPLBJKB_03966at 4161.931 kb on + strand, within OHPLBJKB_03966at 4161.931 kb on + strand, within OHPLBJKB_03966at 4161.932 kb on - strand, within OHPLBJKB_03966at 4161.934 kb on + strand, within OHPLBJKB_03966at 4162.027 kb on + strand, within OHPLBJKB_03966at 4162.027 kb on + strand, within OHPLBJKB_03966at 4162.139 kb on - strand, within OHPLBJKB_03966at 4162.244 kb on + strand, within OHPLBJKB_03966at 4162.245 kb on - strand, within OHPLBJKB_03966at 4162.266 kb on + strand, within OHPLBJKB_03966at 4162.266 kb on + strand, within OHPLBJKB_03966at 4162.267 kb on - strand, within OHPLBJKB_03966at 4162.267 kb on - strand, within OHPLBJKB_03966at 4162.267 kb on - strand, within OHPLBJKB_03966at 4162.354 kb on + strand, within OHPLBJKB_03966at 4162.354 kb on + strand, within OHPLBJKB_03966at 4162.354 kb on + strand, within OHPLBJKB_03966at 4162.354 kb on + strand, within OHPLBJKB_03966at 4162.355 kb on - strand, within OHPLBJKB_03966at 4162.355 kb on - strand, within OHPLBJKB_03966at 4162.355 kb on - strand, within OHPLBJKB_03966at 4162.363 kb on + strand, within OHPLBJKB_03966at 4162.387 kb on + strand, within OHPLBJKB_03966at 4162.547 kb on + strandat 4162.547 kb on + strandat 4162.548 kb on - strandat 4162.548 kb on - strandat 4162.548 kb on - strandat 4162.548 kb on - strandat 4162.551 kb on + strandat 4162.551 kb on + strandat 4162.551 kb on + strandat 4162.552 kb on - strandat 4162.552 kb on - strandat 4162.565 kb on + strandat 4162.565 kb on + strandat 4162.565 kb on + strandat 4162.566 kb on - strandat 4162.566 kb on - strandat 4162.566 kb on - strandat 4162.566 kb on - strandat 4162.598 kb on + strandat 4162.598 kb on + strandat 4162.598 kb on + strandat 4162.599 kb on - strandat 4162.599 kb on - strandat 4162.599 kb on - strandat 4162.599 kb on - strandat 4162.738 kb on + strandat 4162.739 kb on - strandat 4162.739 kb on - strandat 4162.774 kb on + strandat 4162.775 kb on - strandat 4162.804 kb on - strandat 4162.814 kb on + strandat 4162.815 kb on - strandat 4162.997 kb on + strand, within OHPLBJKB_03967at 4162.997 kb on + strand, within OHPLBJKB_03967at 4162.998 kb on - strand, within OHPLBJKB_03967at 4162.998 kb on - strand, within OHPLBJKB_03967at 4162.998 kb on - strand, within OHPLBJKB_03967at 4163.023 kb on + strand, within OHPLBJKB_03967at 4163.024 kb on - strand, within OHPLBJKB_03967at 4163.108 kb on + strand, within OHPLBJKB_03967at 4163.272 kb on + strand, within OHPLBJKB_03967at 4163.273 kb on - strand, within OHPLBJKB_03967at 4163.275 kb on - strand, within OHPLBJKB_03967at 4163.275 kb on - strand, within OHPLBJKB_03967at 4163.275 kb on - strand, within OHPLBJKB_03967at 4163.275 kb on - strand, within OHPLBJKB_03967at 4163.448 kb on + strand, within OHPLBJKB_03967at 4163.448 kb on + strand, within OHPLBJKB_03967at 4163.448 kb on + strand, within OHPLBJKB_03967at 4163.448 kb on + strand, within OHPLBJKB_03967at 4163.449 kb on - strand, within OHPLBJKB_03967at 4163.449 kb on - strand, within OHPLBJKB_03967at 4163.449 kb on - strand, within OHPLBJKB_03967at 4163.449 kb on - strand, within OHPLBJKB_03967at 4163.449 kb on - strand, within OHPLBJKB_03967at 4163.449 kb on - strand, within OHPLBJKB_03967at 4163.449 kb on - strand, within OHPLBJKB_03967at 4163.449 kb on - strand, within OHPLBJKB_03967at 4163.489 kb on - strand, within OHPLBJKB_03967at 4163.496 kb on + strand, within OHPLBJKB_03967at 4163.497 kb on - strand, within OHPLBJKB_03967at 4163.608 kb on + strand, within OHPLBJKB_03967at 4163.608 kb on + strand, within OHPLBJKB_03967at 4163.608 kb on + strand, within OHPLBJKB_03967at 4163.608 kb on + strand, within OHPLBJKB_03967at 4163.608 kb on + strand, within OHPLBJKB_03967at 4163.609 kb on - strand, within OHPLBJKB_03967at 4163.645 kb on + strand, within OHPLBJKB_03967at 4163.645 kb on + strand, within OHPLBJKB_03967at 4163.646 kb on - strand, within OHPLBJKB_03967at 4163.646 kb on - strand, within OHPLBJKB_03967

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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4,160,075 + -0.3
4,160,076 - +0.4
4,160,076 - +0.0
4,160,076 - +0.3
4,160,127 + -0.8
4,160,130 + +0.3
4,160,131 - -2.1
4,160,226 + OHPLBJKB_03964 0.22 +0.5
4,160,319 + OHPLBJKB_03964 0.38 +0.1
4,160,319 + OHPLBJKB_03964 0.38 -0.2
4,160,319 + OHPLBJKB_03964 0.38 -0.1
4,160,320 - OHPLBJKB_03964 0.38 -0.5
4,160,320 - OHPLBJKB_03964 0.38 -0.4
4,160,320 - OHPLBJKB_03964 0.38 -0.5
4,160,320 - OHPLBJKB_03964 0.38 -0.6
4,160,364 - OHPLBJKB_03964 0.45 +0.4
4,160,386 + OHPLBJKB_03964 0.49 -0.4
4,160,386 + OHPLBJKB_03964 0.49 -0.0
4,160,386 + OHPLBJKB_03964 0.49 +1.2
4,160,387 - OHPLBJKB_03964 0.49 +0.2
4,160,387 - OHPLBJKB_03964 0.49 +0.4
4,160,387 - OHPLBJKB_03964 0.49 -0.9
4,160,387 - OHPLBJKB_03964 0.49 +0.1
4,160,387 - OHPLBJKB_03964 0.49 +0.2
4,160,387 - OHPLBJKB_03964 0.49 +0.0
4,160,387 - OHPLBJKB_03964 0.49 +0.2
4,160,387 - OHPLBJKB_03964 0.49 -1.0
4,160,444 + OHPLBJKB_03964 0.58 +0.0
4,160,444 + OHPLBJKB_03964 0.58 -0.6
4,160,444 + OHPLBJKB_03964 0.58 +0.3
4,160,444 + OHPLBJKB_03964 0.58 -0.6
4,160,445 - OHPLBJKB_03964 0.59 -0.3
4,160,445 - OHPLBJKB_03964 0.59 -0.7
4,160,445 - OHPLBJKB_03964 0.59 -0.3
4,160,445 - OHPLBJKB_03964 0.59 -0.7
4,160,445 - OHPLBJKB_03964 0.59 -0.9
4,160,448 - OHPLBJKB_03964 0.59 -0.4
4,160,554 + OHPLBJKB_03964 0.77 +0.7
4,160,577 - OHPLBJKB_03964 0.81 -0.0
4,160,608 + OHPLBJKB_03964 0.86 +0.3
4,160,609 - OHPLBJKB_03964 0.86 +0.2
4,160,733 + OHPLBJKB_03965 0.12 -0.3
4,160,792 - OHPLBJKB_03965 0.27 -1.0
4,160,810 - OHPLBJKB_03965 0.32 +0.7
4,160,946 + OHPLBJKB_03965 0.67 -0.5
4,160,946 + OHPLBJKB_03965 0.67 -1.0
4,160,947 - OHPLBJKB_03965 0.67 +0.4
4,160,960 + OHPLBJKB_03965 0.71 -0.3
4,160,960 + OHPLBJKB_03965 0.71 -0.1
4,161,010 - OHPLBJKB_03965 0.84 -0.0
4,161,010 - OHPLBJKB_03965 0.84 +0.9
4,161,010 - OHPLBJKB_03965 0.84 -2.0
4,161,036 - +0.1
4,161,036 - -0.4
4,161,039 + +0.2
4,161,040 - +0.9
4,161,066 - +0.7
4,161,157 + +1.1
4,161,158 - +0.0
4,161,158 - -0.2
4,161,158 - -0.3
4,161,161 + -0.3
4,161,161 + -0.2
4,161,161 + +0.5
4,161,161 + -0.7
4,161,161 + -1.6
4,161,161 + +1.4
4,161,161 + -0.2
4,161,162 - +0.3
4,161,162 - -0.2
4,161,162 - +0.3
4,161,162 - -0.1
4,161,162 - -0.1
4,161,162 - -0.0
4,161,162 - -0.5
4,161,162 - +0.7
4,161,162 - -1.3
4,161,162 - -1.0
4,161,162 - +0.4
4,161,162 - -0.6
4,161,212 + +0.2
4,161,353 + OHPLBJKB_03966 0.18 +0.1
4,161,353 + OHPLBJKB_03966 0.18 -0.1
4,161,354 - OHPLBJKB_03966 0.18 +0.4
4,161,354 - OHPLBJKB_03966 0.18 +0.4
4,161,354 - OHPLBJKB_03966 0.18 +0.4
4,161,398 + OHPLBJKB_03966 0.21 +0.8
4,161,398 + OHPLBJKB_03966 0.21 -1.3
4,161,399 - OHPLBJKB_03966 0.21 +0.7
4,161,508 + OHPLBJKB_03966 0.27 +0.4
4,161,508 + OHPLBJKB_03966 0.27 +0.4
4,161,508 + OHPLBJKB_03966 0.27 +0.1
4,161,609 - OHPLBJKB_03966 0.34 -0.1
4,161,663 - OHPLBJKB_03966 0.37 +0.8
4,161,714 + OHPLBJKB_03966 0.40 +0.5
4,161,725 - OHPLBJKB_03966 0.41 +0.4
4,161,901 + OHPLBJKB_03966 0.52 -1.0
4,161,901 + OHPLBJKB_03966 0.52 -0.1
4,161,901 + OHPLBJKB_03966 0.52 +0.2
4,161,901 + OHPLBJKB_03966 0.52 +0.8
4,161,901 + OHPLBJKB_03966 0.52 +0.5
4,161,901 + OHPLBJKB_03966 0.52 +0.5
4,161,901 + OHPLBJKB_03966 0.52 -0.6
4,161,901 + OHPLBJKB_03966 0.52 +0.7
4,161,901 + OHPLBJKB_03966 0.52 +0.2
4,161,901 + OHPLBJKB_03966 0.52 +1.0
4,161,902 - OHPLBJKB_03966 0.52 -0.6
4,161,902 - OHPLBJKB_03966 0.52 -0.4
4,161,902 - OHPLBJKB_03966 0.52 +0.0
4,161,902 - OHPLBJKB_03966 0.52 -0.2
4,161,902 - OHPLBJKB_03966 0.52 -0.4
4,161,931 + OHPLBJKB_03966 0.53 +0.2
4,161,931 + OHPLBJKB_03966 0.53 -0.3
4,161,931 + OHPLBJKB_03966 0.53 -1.0
4,161,932 - OHPLBJKB_03966 0.53 -0.0
4,161,934 + OHPLBJKB_03966 0.54 +0.5
4,162,027 + OHPLBJKB_03966 0.59 +0.1
4,162,027 + OHPLBJKB_03966 0.59 -0.3
4,162,139 - OHPLBJKB_03966 0.66 -0.5
4,162,244 + OHPLBJKB_03966 0.73 +0.1
4,162,245 - OHPLBJKB_03966 0.73 +0.1
4,162,266 + OHPLBJKB_03966 0.74 +0.3
4,162,266 + OHPLBJKB_03966 0.74 +0.4
4,162,267 - OHPLBJKB_03966 0.74 -0.8
4,162,267 - OHPLBJKB_03966 0.74 +1.7
4,162,267 - OHPLBJKB_03966 0.74 +0.5
4,162,354 + OHPLBJKB_03966 0.79 +0.6
4,162,354 + OHPLBJKB_03966 0.79 -0.7
4,162,354 + OHPLBJKB_03966 0.79 +0.3
4,162,354 + OHPLBJKB_03966 0.79 +0.4
4,162,355 - OHPLBJKB_03966 0.80 -1.2
4,162,355 - OHPLBJKB_03966 0.80 -0.3
4,162,355 - OHPLBJKB_03966 0.80 -0.1
4,162,363 + OHPLBJKB_03966 0.80 +0.8
4,162,387 + OHPLBJKB_03966 0.82 +0.2
4,162,547 + -0.7
4,162,547 + -0.0
4,162,548 - -0.3
4,162,548 - +1.2
4,162,548 - -0.2
4,162,548 - -1.0
4,162,551 + -0.7
4,162,551 + -0.1
4,162,551 + +0.3
4,162,552 - -2.2
4,162,552 - +0.3
4,162,565 + +0.2
4,162,565 + +0.3
4,162,565 + -0.3
4,162,566 - -0.6
4,162,566 - +0.7
4,162,566 - +0.2
4,162,566 - -0.1
4,162,598 + +0.3
4,162,598 + +0.7
4,162,598 + -0.5
4,162,599 - -0.9
4,162,599 - +0.8
4,162,599 - -0.3
4,162,599 - +0.0
4,162,738 + +0.6
4,162,739 - -0.0
4,162,739 - +0.5
4,162,774 + +0.4
4,162,775 - -0.7
4,162,804 - +2.1
4,162,814 + -0.2
4,162,815 - -0.1
4,162,997 + OHPLBJKB_03967 0.20 -0.8
4,162,997 + OHPLBJKB_03967 0.20 +1.7
4,162,998 - OHPLBJKB_03967 0.20 -0.7
4,162,998 - OHPLBJKB_03967 0.20 -0.0
4,162,998 - OHPLBJKB_03967 0.20 +0.1
4,163,023 + OHPLBJKB_03967 0.23 +0.1
4,163,024 - OHPLBJKB_03967 0.23 -0.1
4,163,108 + OHPLBJKB_03967 0.32 -0.2
4,163,272 + OHPLBJKB_03967 0.49 -0.7
4,163,273 - OHPLBJKB_03967 0.49 +0.4
4,163,275 - OHPLBJKB_03967 0.49 +0.2
4,163,275 - OHPLBJKB_03967 0.49 -0.9
4,163,275 - OHPLBJKB_03967 0.49 -0.8
4,163,275 - OHPLBJKB_03967 0.49 -0.4
4,163,448 + OHPLBJKB_03967 0.68 +0.4
4,163,448 + OHPLBJKB_03967 0.68 -0.1
4,163,448 + OHPLBJKB_03967 0.68 +0.2
4,163,448 + OHPLBJKB_03967 0.68 -0.1
4,163,449 - OHPLBJKB_03967 0.68 +1.6
4,163,449 - OHPLBJKB_03967 0.68 +0.0
4,163,449 - OHPLBJKB_03967 0.68 -0.4
4,163,449 - OHPLBJKB_03967 0.68 -0.1
4,163,449 - OHPLBJKB_03967 0.68 -0.5
4,163,449 - OHPLBJKB_03967 0.68 -0.5
4,163,449 - OHPLBJKB_03967 0.68 +1.2
4,163,449 - OHPLBJKB_03967 0.68 +1.1
4,163,489 - OHPLBJKB_03967 0.72 -0.3
4,163,496 + OHPLBJKB_03967 0.73 -0.7
4,163,497 - OHPLBJKB_03967 0.73 +1.4
4,163,608 + OHPLBJKB_03967 0.84 +0.1
4,163,608 + OHPLBJKB_03967 0.84 +1.6
4,163,608 + OHPLBJKB_03967 0.84 +1.1
4,163,608 + OHPLBJKB_03967 0.84 -0.3
4,163,608 + OHPLBJKB_03967 0.84 +0.5
4,163,609 - OHPLBJKB_03967 0.84 +0.2
4,163,645 + OHPLBJKB_03967 0.88 -0.1
4,163,645 + OHPLBJKB_03967 0.88 -0.6
4,163,646 - OHPLBJKB_03967 0.88 -0.7
4,163,646 - OHPLBJKB_03967 0.88 +0.6

Or see this region's nucleotide sequence