Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02071

Experiment: lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02070 and OHPLBJKB_02071 are separated by 333 nucleotidesOHPLBJKB_02071 and OHPLBJKB_02072 are separated by 50 nucleotides OHPLBJKB_02070: OHPLBJKB_02070 - Murein DD-endopeptidase MepH, at 2,145,443 to 2,146,258 _02070 OHPLBJKB_02071: OHPLBJKB_02071 - Glutaredoxin 4, at 2,146,592 to 2,146,939 _02071 OHPLBJKB_02072: OHPLBJKB_02072 - ATP-dependent RNA helicase SrmB, at 2,146,990 to 2,151,606 _02072 Position (kb) 2146 2147Strain fitness (log2 ratio) -2 -1 0 1 2at 2145.614 kb on - strand, within OHPLBJKB_02070at 2145.649 kb on + strand, within OHPLBJKB_02070at 2145.681 kb on + strand, within OHPLBJKB_02070at 2145.681 kb on + strand, within OHPLBJKB_02070at 2145.682 kb on - strand, within OHPLBJKB_02070at 2145.682 kb on - strand, within OHPLBJKB_02070at 2145.682 kb on - strand, within OHPLBJKB_02070at 2145.682 kb on - strand, within OHPLBJKB_02070at 2145.729 kb on + strand, within OHPLBJKB_02070at 2145.729 kb on + strand, within OHPLBJKB_02070at 2145.735 kb on + strand, within OHPLBJKB_02070at 2145.738 kb on + strand, within OHPLBJKB_02070at 2145.925 kb on + strand, within OHPLBJKB_02070at 2145.926 kb on - strand, within OHPLBJKB_02070at 2145.935 kb on - strand, within OHPLBJKB_02070at 2145.967 kb on + strand, within OHPLBJKB_02070at 2145.967 kb on + strand, within OHPLBJKB_02070at 2146.004 kb on - strand, within OHPLBJKB_02070at 2146.063 kb on + strand, within OHPLBJKB_02070at 2146.141 kb on + strand, within OHPLBJKB_02070at 2146.141 kb on + strand, within OHPLBJKB_02070at 2146.142 kb on - strand, within OHPLBJKB_02070at 2146.142 kb on - strand, within OHPLBJKB_02070at 2146.142 kb on - strand, within OHPLBJKB_02070at 2146.196 kb on + strandat 2146.323 kb on + strandat 2146.323 kb on + strandat 2146.324 kb on - strandat 2146.330 kb on + strandat 2146.331 kb on - strandat 2146.331 kb on - strandat 2146.331 kb on - strandat 2146.349 kb on + strandat 2146.349 kb on + strandat 2146.423 kb on + strandat 2146.423 kb on + strandat 2146.498 kb on - strandat 2146.546 kb on + strandat 2146.547 kb on - strandat 2146.649 kb on + strand, within OHPLBJKB_02071at 2146.737 kb on - strand, within OHPLBJKB_02071at 2146.737 kb on - strand, within OHPLBJKB_02071at 2146.784 kb on + strand, within OHPLBJKB_02071at 2146.784 kb on + strand, within OHPLBJKB_02071at 2146.784 kb on + strand, within OHPLBJKB_02071at 2146.785 kb on - strand, within OHPLBJKB_02071at 2146.785 kb on - strand, within OHPLBJKB_02071at 2146.790 kb on - strand, within OHPLBJKB_02071at 2146.910 kb on + strandat 2146.910 kb on + strandat 2146.910 kb on + strandat 2146.910 kb on + strandat 2146.910 kb on + strandat 2146.910 kb on + strandat 2146.911 kb on - strandat 2146.911 kb on - strandat 2146.952 kb on + strandat 2147.072 kb on - strandat 2147.210 kb on + strandat 2147.210 kb on + strandat 2147.210 kb on + strandat 2147.211 kb on - strandat 2147.211 kb on - strandat 2147.349 kb on + strandat 2147.349 kb on + strandat 2147.350 kb on - strandat 2147.400 kb on + strandat 2147.401 kb on - strandat 2147.441 kb on - strandat 2147.478 kb on + strand, within OHPLBJKB_02072at 2147.478 kb on + strand, within OHPLBJKB_02072at 2147.478 kb on + strand, within OHPLBJKB_02072at 2147.478 kb on + strand, within OHPLBJKB_02072at 2147.479 kb on - strand, within OHPLBJKB_02072at 2147.571 kb on + strand, within OHPLBJKB_02072at 2147.660 kb on + strand, within OHPLBJKB_02072at 2147.660 kb on + strand, within OHPLBJKB_02072at 2147.661 kb on - strand, within OHPLBJKB_02072at 2147.661 kb on - strand, within OHPLBJKB_02072at 2147.661 kb on - strand, within OHPLBJKB_02072at 2147.661 kb on - strand, within OHPLBJKB_02072at 2147.661 kb on - strand, within OHPLBJKB_02072at 2147.661 kb on - strand, within OHPLBJKB_02072at 2147.666 kb on - strand, within OHPLBJKB_02072at 2147.690 kb on + strand, within OHPLBJKB_02072at 2147.690 kb on + strand, within OHPLBJKB_02072at 2147.930 kb on - strand, within OHPLBJKB_02072

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Per-strain Table

Position Strand Gene LocusTag Fraction lib only
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2,145,614 - OHPLBJKB_02070 0.21 +0.7
2,145,649 + OHPLBJKB_02070 0.25 -0.2
2,145,681 + OHPLBJKB_02070 0.29 +0.1
2,145,681 + OHPLBJKB_02070 0.29 -1.3
2,145,682 - OHPLBJKB_02070 0.29 -1.7
2,145,682 - OHPLBJKB_02070 0.29 -0.1
2,145,682 - OHPLBJKB_02070 0.29 -1.2
2,145,682 - OHPLBJKB_02070 0.29 -1.6
2,145,729 + OHPLBJKB_02070 0.35 -1.6
2,145,729 + OHPLBJKB_02070 0.35 +1.2
2,145,735 + OHPLBJKB_02070 0.36 +1.6
2,145,738 + OHPLBJKB_02070 0.36 -0.3
2,145,925 + OHPLBJKB_02070 0.59 +0.3
2,145,926 - OHPLBJKB_02070 0.59 -1.3
2,145,935 - OHPLBJKB_02070 0.60 -0.0
2,145,967 + OHPLBJKB_02070 0.64 +0.2
2,145,967 + OHPLBJKB_02070 0.64 -0.2
2,146,004 - OHPLBJKB_02070 0.69 -0.9
2,146,063 + OHPLBJKB_02070 0.76 -0.3
2,146,141 + OHPLBJKB_02070 0.86 -0.7
2,146,141 + OHPLBJKB_02070 0.86 -0.6
2,146,142 - OHPLBJKB_02070 0.86 -0.3
2,146,142 - OHPLBJKB_02070 0.86 -0.4
2,146,142 - OHPLBJKB_02070 0.86 -0.8
2,146,196 + -1.0
2,146,323 + -0.7
2,146,323 + +0.3
2,146,324 - -0.7
2,146,330 + +1.1
2,146,331 - +0.8
2,146,331 - +0.4
2,146,331 - -1.3
2,146,349 + -1.3
2,146,349 + +0.4
2,146,423 + +0.5
2,146,423 + -0.1
2,146,498 - +0.1
2,146,546 + +0.6
2,146,547 - +0.8
2,146,649 + OHPLBJKB_02071 0.16 +0.1
2,146,737 - OHPLBJKB_02071 0.42 +0.4
2,146,737 - OHPLBJKB_02071 0.42 -0.8
2,146,784 + OHPLBJKB_02071 0.55 -0.9
2,146,784 + OHPLBJKB_02071 0.55 -0.5
2,146,784 + OHPLBJKB_02071 0.55 +0.1
2,146,785 - OHPLBJKB_02071 0.55 +0.7
2,146,785 - OHPLBJKB_02071 0.55 -1.3
2,146,790 - OHPLBJKB_02071 0.57 -1.3
2,146,910 + +0.3
2,146,910 + -0.1
2,146,910 + -0.4
2,146,910 + +0.3
2,146,910 + -2.4
2,146,910 + +0.3
2,146,911 - +0.7
2,146,911 - +0.6
2,146,952 + -2.0
2,147,072 - +0.2
2,147,210 + -1.1
2,147,210 + +1.2
2,147,210 + +0.3
2,147,211 - +1.4
2,147,211 - +0.1
2,147,349 + -0.1
2,147,349 + +0.8
2,147,350 - +0.3
2,147,400 + -0.1
2,147,401 - +0.3
2,147,441 - +0.5
2,147,478 + OHPLBJKB_02072 0.11 +0.2
2,147,478 + OHPLBJKB_02072 0.11 -1.1
2,147,478 + OHPLBJKB_02072 0.11 +0.2
2,147,478 + OHPLBJKB_02072 0.11 +0.1
2,147,479 - OHPLBJKB_02072 0.11 -0.5
2,147,571 + OHPLBJKB_02072 0.13 +0.8
2,147,660 + OHPLBJKB_02072 0.15 +0.3
2,147,660 + OHPLBJKB_02072 0.15 +0.2
2,147,661 - OHPLBJKB_02072 0.15 +0.4
2,147,661 - OHPLBJKB_02072 0.15 -0.3
2,147,661 - OHPLBJKB_02072 0.15 +2.1
2,147,661 - OHPLBJKB_02072 0.15 -0.8
2,147,661 - OHPLBJKB_02072 0.15 +0.2
2,147,661 - OHPLBJKB_02072 0.15 +0.1
2,147,666 - OHPLBJKB_02072 0.15 +1.1
2,147,690 + OHPLBJKB_02072 0.15 +0.0
2,147,690 + OHPLBJKB_02072 0.15 -0.6
2,147,930 - OHPLBJKB_02072 0.20 +0.9

Or see this region's nucleotide sequence