Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00106 and OHPLBJKB_00107 are separated by 11 nucleotides OHPLBJKB_00107 and OHPLBJKB_00108 are separated by 47 nucleotides OHPLBJKB_00108 and OHPLBJKB_00109 are separated by 20 nucleotides
OHPLBJKB_00106: OHPLBJKB_00106 - hypothetical protein, at 115,732 to 116,193
_00106
OHPLBJKB_00107: OHPLBJKB_00107 - hypothetical protein, at 116,205 to 117,143
_00107
OHPLBJKB_00108: OHPLBJKB_00108 - Protein YibA, at 117,191 to 118,033
_00108
OHPLBJKB_00109: OHPLBJKB_00109 - hypothetical protein, at 118,054 to 119,142
_00109
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-2
-1
0
1 at 115.258 kb on + strand at 115.367 kb on - strand at 115.394 kb on - strand at 115.489 kb on - strand at 115.633 kb on - strand at 115.667 kb on + strand at 115.667 kb on + strand at 115.671 kb on + strand at 115.671 kb on + strand at 115.673 kb on + strand at 115.673 kb on + strand at 115.674 kb on - strand at 115.674 kb on - strand at 115.676 kb on + strand at 115.677 kb on - strand at 115.677 kb on - strand at 115.697 kb on + strand at 115.697 kb on + strand at 115.697 kb on + strand at 115.698 kb on - strand at 115.701 kb on - strand at 115.701 kb on - strand at 115.725 kb on - strand at 116.003 kb on + strand, within OHPLBJKB_00106 at 116.206 kb on + strand at 116.243 kb on + strand at 116.307 kb on - strand, within OHPLBJKB_00107 at 116.307 kb on - strand, within OHPLBJKB_00107 at 116.372 kb on + strand, within OHPLBJKB_00107 at 116.372 kb on + strand, within OHPLBJKB_00107 at 116.430 kb on - strand, within OHPLBJKB_00107 at 116.542 kb on + strand, within OHPLBJKB_00107 at 116.548 kb on - strand, within OHPLBJKB_00107 at 116.589 kb on - strand, within OHPLBJKB_00107 at 116.634 kb on - strand, within OHPLBJKB_00107 at 116.636 kb on + strand, within OHPLBJKB_00107 at 116.649 kb on + strand, within OHPLBJKB_00107 at 116.661 kb on - strand, within OHPLBJKB_00107 at 116.686 kb on - strand, within OHPLBJKB_00107 at 116.709 kb on + strand, within OHPLBJKB_00107 at 116.715 kb on + strand, within OHPLBJKB_00107 at 116.741 kb on - strand, within OHPLBJKB_00107 at 116.848 kb on + strand, within OHPLBJKB_00107 at 116.926 kb on + strand, within OHPLBJKB_00107 at 116.926 kb on + strand, within OHPLBJKB_00107 at 117.179 kb on - strand at 117.256 kb on + strand at 117.256 kb on + strand at 117.256 kb on + strand at 117.256 kb on + strand at 117.256 kb on + strand at 117.257 kb on - strand at 117.259 kb on + strand at 117.259 kb on + strand at 117.263 kb on + strand at 117.263 kb on + strand at 117.472 kb on - strand, within OHPLBJKB_00108 at 117.608 kb on - strand, within OHPLBJKB_00108
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 115,258 + -0.9 115,367 - +0.0 115,394 - +0.4 115,489 - +0.3 115,633 - -0.7 115,667 + +1.4 115,667 + -0.2 115,671 + -1.4 115,671 + -0.7 115,673 + -1.2 115,673 + -0.2 115,674 - +0.1 115,674 - -1.3 115,676 + -0.2 115,677 - -2.7 115,677 - -0.8 115,697 + -0.3 115,697 + +0.1 115,697 + -1.1 115,698 - -0.0 115,701 - +0.7 115,701 - -0.4 115,725 - +0.1 116,003 + OHPLBJKB_00106 0.59 +0.1 116,206 + -0.6 116,243 + -0.6 116,307 - OHPLBJKB_00107 0.11 -0.8 116,307 - OHPLBJKB_00107 0.11 +0.9 116,372 + OHPLBJKB_00107 0.18 -0.4 116,372 + OHPLBJKB_00107 0.18 -0.1 116,430 - OHPLBJKB_00107 0.24 +0.0 116,542 + OHPLBJKB_00107 0.36 -0.0 116,548 - OHPLBJKB_00107 0.37 +0.1 116,589 - OHPLBJKB_00107 0.41 -0.5 116,634 - OHPLBJKB_00107 0.46 -1.0 116,636 + OHPLBJKB_00107 0.46 +0.3 116,649 + OHPLBJKB_00107 0.47 +0.2 116,661 - OHPLBJKB_00107 0.49 -1.0 116,686 - OHPLBJKB_00107 0.51 +0.4 116,709 + OHPLBJKB_00107 0.54 -1.3 116,715 + OHPLBJKB_00107 0.54 +1.5 116,741 - OHPLBJKB_00107 0.57 -0.6 116,848 + OHPLBJKB_00107 0.68 -0.7 116,926 + OHPLBJKB_00107 0.77 -0.6 116,926 + OHPLBJKB_00107 0.77 -0.5 117,179 - +0.6 117,256 + +1.0 117,256 + +0.5 117,256 + -0.2 117,256 + +1.1 117,256 + +1.0 117,257 - -0.9 117,259 + -1.8 117,259 + +0.1 117,263 + -0.0 117,263 + +1.3 117,472 - OHPLBJKB_00108 0.33 -0.5 117,608 - OHPLBJKB_00108 0.49 -1.0
Or see this region's nucleotide sequence