Experiment: lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04402 and OHPLBJKB_04403 are separated by 348 nucleotides OHPLBJKB_04403 and OHPLBJKB_04404 overlap by 4 nucleotides OHPLBJKB_04404 and OHPLBJKB_04405 are separated by 11 nucleotides OHPLBJKB_04405 and OHPLBJKB_04406 overlap by 14 nucleotides OHPLBJKB_04406 and OHPLBJKB_04407 overlap by 11 nucleotides
OHPLBJKB_04402: OHPLBJKB_04402 - hypothetical protein, at 60,430 to 60,534
_04402
OHPLBJKB_04403: OHPLBJKB_04403 - Protein TraV, at 60,883 to 61,398
_04403
OHPLBJKB_04404: OHPLBJKB_04404 - hypothetical protein, at 61,395 to 61,646
_04404
OHPLBJKB_04405: OHPLBJKB_04405 - hypothetical protein, at 61,658 to 61,855
_04405
OHPLBJKB_04406: OHPLBJKB_04406 - hypothetical protein, at 61,842 to 62,432
_04406
OHPLBJKB_04407: OHPLBJKB_04407 - hypothetical protein, at 62,422 to 63,849
_04407
Position (kb) 61
62 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 60.421 kb on + strand at 60.428 kb on - strand at 60.431 kb on + strand at 60.511 kb on - strand, within OHPLBJKB_04402 at 60.511 kb on - strand, within OHPLBJKB_04402 at 60.528 kb on + strand at 60.529 kb on - strand at 60.866 kb on + strand at 60.918 kb on + strand at 60.951 kb on - strand, within OHPLBJKB_04403 at 60.970 kb on - strand, within OHPLBJKB_04403 at 60.971 kb on + strand, within OHPLBJKB_04403 at 60.971 kb on + strand, within OHPLBJKB_04403 at 60.972 kb on - strand, within OHPLBJKB_04403 at 61.083 kb on + strand, within OHPLBJKB_04403 at 61.291 kb on - strand, within OHPLBJKB_04403 at 61.291 kb on - strand, within OHPLBJKB_04403 at 61.354 kb on + strand at 61.355 kb on - strand at 61.355 kb on - strand at 61.357 kb on + strand at 61.357 kb on + strand at 61.505 kb on + strand, within OHPLBJKB_04404 at 61.506 kb on - strand, within OHPLBJKB_04404 at 61.508 kb on - strand, within OHPLBJKB_04404 at 61.513 kb on + strand, within OHPLBJKB_04404 at 61.513 kb on + strand, within OHPLBJKB_04404 at 61.640 kb on + strand at 61.640 kb on + strand at 61.696 kb on + strand, within OHPLBJKB_04405 at 61.749 kb on - strand, within OHPLBJKB_04405 at 61.786 kb on + strand, within OHPLBJKB_04405 at 61.828 kb on + strand, within OHPLBJKB_04405 at 61.828 kb on + strand, within OHPLBJKB_04405 at 61.831 kb on + strand, within OHPLBJKB_04405 at 61.832 kb on - strand, within OHPLBJKB_04405 at 61.838 kb on - strand at 61.840 kb on + strand at 61.843 kb on + strand at 61.844 kb on - strand at 62.044 kb on + strand, within OHPLBJKB_04406 at 62.044 kb on + strand, within OHPLBJKB_04406 at 62.044 kb on + strand, within OHPLBJKB_04406 at 62.045 kb on - strand, within OHPLBJKB_04406 at 62.045 kb on - strand, within OHPLBJKB_04406 at 62.045 kb on - strand, within OHPLBJKB_04406 at 62.045 kb on - strand, within OHPLBJKB_04406 at 62.045 kb on - strand, within OHPLBJKB_04406 at 62.045 kb on - strand, within OHPLBJKB_04406 at 62.045 kb on - strand, within OHPLBJKB_04406 at 62.113 kb on + strand, within OHPLBJKB_04406 at 62.114 kb on - strand, within OHPLBJKB_04406 at 62.154 kb on + strand, within OHPLBJKB_04406 at 62.155 kb on - strand, within OHPLBJKB_04406 at 62.155 kb on - strand, within OHPLBJKB_04406 at 62.244 kb on - strand, within OHPLBJKB_04406 at 62.289 kb on + strand, within OHPLBJKB_04406 at 62.290 kb on - strand, within OHPLBJKB_04406 at 62.420 kb on + strand at 62.421 kb on - strand at 62.423 kb on + strand at 62.423 kb on + strand at 62.423 kb on + strand at 62.424 kb on - strand at 62.424 kb on - strand at 62.511 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction lib only remove 60,421 + +5.4 60,428 - +0.9 60,431 + +5.0 60,511 - OHPLBJKB_04402 0.77 +0.8 60,511 - OHPLBJKB_04402 0.77 -0.7 60,528 + +3.5 60,529 - +0.5 60,866 + +4.9 60,918 + +5.2 60,951 - OHPLBJKB_04403 0.13 +5.7 60,970 - OHPLBJKB_04403 0.17 +5.4 60,971 + OHPLBJKB_04403 0.17 +5.2 60,971 + OHPLBJKB_04403 0.17 +6.8 60,972 - OHPLBJKB_04403 0.17 +5.8 61,083 + OHPLBJKB_04403 0.39 +5.9 61,291 - OHPLBJKB_04403 0.79 +5.7 61,291 - OHPLBJKB_04403 0.79 +5.7 61,354 + +4.9 61,355 - +5.1 61,355 - +4.2 61,357 + +4.1 61,357 + +5.1 61,505 + OHPLBJKB_04404 0.44 +5.7 61,506 - OHPLBJKB_04404 0.44 +0.3 61,508 - OHPLBJKB_04404 0.45 +0.8 61,513 + OHPLBJKB_04404 0.47 +5.2 61,513 + OHPLBJKB_04404 0.47 +5.7 61,640 + +5.0 61,640 + +5.2 61,696 + OHPLBJKB_04405 0.19 +4.5 61,749 - OHPLBJKB_04405 0.46 -0.7 61,786 + OHPLBJKB_04405 0.65 +5.3 61,828 + OHPLBJKB_04405 0.86 +5.0 61,828 + OHPLBJKB_04405 0.86 +5.6 61,831 + OHPLBJKB_04405 0.87 +6.0 61,832 - OHPLBJKB_04405 0.88 +1.7 61,838 - +2.9 61,840 + +4.8 61,843 + +4.9 61,844 - +0.5 62,044 + OHPLBJKB_04406 0.34 +5.5 62,044 + OHPLBJKB_04406 0.34 +5.6 62,044 + OHPLBJKB_04406 0.34 +5.6 62,045 - OHPLBJKB_04406 0.34 +0.8 62,045 - OHPLBJKB_04406 0.34 +0.9 62,045 - OHPLBJKB_04406 0.34 +0.6 62,045 - OHPLBJKB_04406 0.34 +2.6 62,045 - OHPLBJKB_04406 0.34 +0.3 62,045 - OHPLBJKB_04406 0.34 +0.3 62,045 - OHPLBJKB_04406 0.34 +1.4 62,113 + OHPLBJKB_04406 0.46 +5.4 62,114 - OHPLBJKB_04406 0.46 +0.6 62,154 + OHPLBJKB_04406 0.53 +6.1 62,155 - OHPLBJKB_04406 0.53 +0.1 62,155 - OHPLBJKB_04406 0.53 +1.3 62,244 - OHPLBJKB_04406 0.68 +3.6 62,289 + OHPLBJKB_04406 0.76 +4.7 62,290 - OHPLBJKB_04406 0.76 -1.8 62,420 + +5.3 62,421 - +4.8 62,423 + +4.8 62,423 + +6.3 62,423 + +5.4 62,424 - +4.0 62,424 - +3.9 62,511 + +4.2
Or see this region's nucleotide sequence